Plant FIBer expression Database

Potri.010G104000 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.010G104000.1 pacid=42798355 polypeptide=Potri.010G104000.1.p locus=Potri.010G104000 ID=Potri.010G104000.1.v4.1 annot-version=v4.1
ATGTATCTGGTTATATCCGGAAAGGTTTCTGTTTCCGATTTATTTGCCTTTATGGCCTTACTTTCGCGATCAAATTTTATGCTGGATTTCTACATATTAG
GGCTTTGTCCAGTTTATTTGACCTTTTTTTGGGAGTTAGAAAATTTGATCTGTAATTTTTGCTATCAGCTTGTCATTTTTGTTGAGGTTCCCGTCACTGA
GGATTATGTTGCTGACAAACCATGGATTTGTCTCTTCTATATATCAATACCTCTTGATAGTACTCTTACCATTCCATTTATTGCTGATCGAAATATTGTC
AAAGGGAGCTTTTGGTTCTGTTTTTTACCCGTTGAAGTACATTTTTAA
AA sequence
>Potri.010G104000.1 pacid=42798355 polypeptide=Potri.010G104000.1.p locus=Potri.010G104000 ID=Potri.010G104000.1.v4.1 annot-version=v4.1
MYLVISGKVSVSDLFAFMALLSRSNFMLDFYILGLCPVYLTFFWELENLICNFCYQLVIFVEVPVTEDYVADKPWICLFYISIPLDSTLTIPFIADRNIV
KGSFWFCFLPVEVHF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.010G104000
[exp]
0 1
AT2G42280 bHLH bHLH130 basic helix-loop-helix (bHLH) ... Potri.016G050500
[exp]
4.00 0.7860
AT5G54860 Major facilitator superfamily ... Potri.011G137300
[exp]
7.48 0.7724
AT1G61850 phospholipases;galactolipases ... Potri.011G000200
[exp]
7.54 0.8019
AT2G29190 APUM2 pumilio 2 (.1.2) Potri.001G243400
[exp]
7.87 0.8121
AT2G22410 SLO1 SLOW GROWTH 1 (.1) Potri.004G217900
[exp]
13.96 0.7841
AT2G38870 Serine protease inhibitor, pot... Potri.016G078800
[exp]
14.28 0.7162
AT4G23000 Calcineurin-like metallo-phosp... Potri.014G034400
[exp]
15.90 0.7762
AT2G18900 Transducin/WD40 repeat-like su... Potri.018G091100
[exp]
17.66 0.7777
AT2G25930 PYK20, ELF3 EARLY FLOWERING 3, hydroxyprol... Potri.006G233800
[exp]
19.33 0.7674 ELF3.3
AT5G53450 ORG1 OBP3-responsive gene 1 (.1.2) Potri.015G016600
[exp]
21.02 0.6589

Potri.010G104000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.