Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01770 320 / 3e-111 ATVIT1, VIT1 vacuolar iron transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G104200 [exp] 326 / 8e-114 AT2G01770 384 / 1e-136 vacuolar iron transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021809 [exp] 320 / 2e-111 AT2G01770 413 / 3e-148 vacuolar iron transporter 1 (.1) Lus10003704 [exp] 299 / 2e-102 AT2G01770 315 / 1e-108 vacuolar iron transporter 1 (.1) Lus10001589 [exp] 278 / 3e-94 AT2G01770 358 / 5e-126 vacuolar iron transporter 1 (.1) Lus10034583 [exp] 0 / 1 AT2G01770 317 / 2e-111 vacuolar iron transporter 1 (.1) Lus10001588 [exp] 0 / 1 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003706 [exp] 0 / 1 AT2G01770 115 / 1e-30 vacuolar iron transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01988 [poplar] [flax] VIT1 VIT family
Representative CDS sequence Show only first row Show all	>Potri.010G104100.1 pacid=42800128 polypeptide=Potri.010G104100.1.p locus=Potri.010G104100 ID=Potri.010G104100.1.v4.1 annot-version=v4.1 ATGGCAGAAAATGGGTACGCTGACCTAGAGAAGCAGAAATTGTTTCTTGAAGAGCATGAAGAGAAGCATTTCATGTCTAGTGAGATTGTCCGTGACATTA TCATAGGTGTCTCTGATGGCCTCACAGTCCCTTTTGCCCTAGCCGCTGGATTGTCCGGTGCCAATGTGACATCCAGCATCATTCTTATTGCCGGCATTGC TGAGGTTGCTGCTGGTGCCATCTCCATGGGACTTGGCGGGTACCTTGCAGCAGAAAGCGAAGCTGACCATTACACGAGGGAACTAAAAAGAGAGCAAGAA GAGATCATCAGTGTCCCCGATACAGAGGCTGCTGAATGTGGAGAGATATTATCACAGTATGGTATTGAGCCACACGAATATGAGCCGGTGGTGAATGCTC TGAGGAGGAACCCCCAGCACTGGCTGGATTTCATGATGAAGTTTGAACTTGGACTGGAGAAACCAGACCCCATGAGAGCACTGCAAAGTGCCTTGACTAT TGCTATTTCTTACATAGTGGGTGGATTGGTACCCTTGGCACCATACATGGTCATTCCACTTGCTAAAGAAGCTGTCGTTGCATCTGTTATAATAACCATA GTGGCATTACTACTTTTTGGGTTTGTGAAGGGTTACTTCACTGGTAATAATCCTTTCAAGAATGCTATCCAAACTGCTTTCATAGGAGCCATGGCATCAG CAGCTGCTTATTGCATAGCTAAGGTTTTTCGAGCTTGA
AA sequence Show only first row Show all	>Potri.010G104100.1 pacid=42800128 polypeptide=Potri.010G104100.1.p locus=Potri.010G104100 ID=Potri.010G104100.1.v4.1 annot-version=v4.1 MAENGYADLEKQKLFLEEHEEKHFMSSEIVRDIIIGVSDGLTVPFALAAGLSGANVTSSIILIAGIAEVAAGAISMGLGGYLAAESEADHYTRELKREQE EIISVPDTEAAECGEILSQYGIEPHEYEPVVNALRRNPQHWLDFMMKFELGLEKPDPMRALQSALTIAISYIVGGLVPLAPYMVIPLAKEAVVASVIITI VALLLFGFVKGYFTGNNPFKNAIQTAFIGAMASAAAYCIAKVFRA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01770		ATVIT1, VIT1	vacuolar iron transporter 1 (....		Potri.010G104100 [exp]	0	1
AT5G38760			Late embryogenesis abundant pr...		Potri.004G107600 [exp]	7.07	0.7655
AT1G75700		HVA22G	HVA22-like protein G (.1)		Potri.004G166800 [exp]	8.48	0.7941
AT5G22470			NAD+ ADP-ribosyltransferases;N...		Potri.009G143900 [exp]	18.24	0.7857
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Potri.003G083200 [exp]	30.29	0.7510	PtrEXLB1,EXLB1.1
AT2G24130			Leucine-rich receptor-like pro...		Potri.018G103400 [exp]	34.39	0.7474
					Potri.001G220400 [exp]	34.89	0.7379
AT2G38870			Serine protease inhibitor, pot...		Potri.002G042300 [exp]	35.56	0.7401
AT3G11680			Aluminium activated malate tra...		Potri.016G070000 [exp]	37.34	0.7406
AT5G38760			Late embryogenesis abundant pr...		Potri.004G107500 [exp]	38.72	0.7371
AT3G19620			Glycosyl hydrolase family prot...		Potri.007G114300 [exp]	43.24	0.6602

Compare expression of checked genes

Potri.010G104100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.