Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-HSF5.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67970 319 / 6e-107 HSF AT-HSFA8 heat shock transcription factor A8 (.1) AT1G32330 236 / 2e-73 HSF ATHSFA1D heat shock transcription factor A1D (.1) AT4G17750 234 / 4e-72 HSF ATHSFA1A, ATHSF1, HSF1 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1A, ARABIDOPSIS THALIANA HEAT SHOCK FACTOR 1, heat shock factor 1 (.1) AT5G16820 224 / 8e-69 HSF ATHSF3, ATHSFA1B, HSF3 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) AT3G22830 207 / 4e-63 HSF AT-HSFA6B ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) AT3G02990 208 / 1e-62 HSF ATHSFA1E heat shock transcription factor A1E (.1) AT2G26150 198 / 4e-60 HSF ATHSFA2 heat shock transcription factor A2 (.1.2) AT3G51910 170 / 2e-50 HSF AT-HSFA7A ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A7A, heat shock transcription factor A7A (.1) AT5G54070 171 / 5e-50 HSF AT-HSFA9 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A9, heat shock transcription factor A9 (.1) AT5G03720 172 / 1e-49 HSF AT-HSFA3 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G136800 [exp] 690 / 0 AT1G67970 322 / 5e-108 heat shock transcription factor A8 (.1) Potri.001G138900 [exp] 250 / 2e-78 AT1G32330 408 / 2e-138 heat shock transcription factor A1D (.1) Potri.003G095000 [exp] 247 / 3e-77 AT1G32330 375 / 2e-125 heat shock transcription factor A1D (.1) Potri.013G079800 [exp] 218 / 6e-66 AT5G16820 344 / 1e-113 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Potri.002G048200 [exp] 207 / 1e-63 AT3G22830 347 / 7e-118 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.005G214800 [exp] 204 / 2e-62 AT3G22830 355 / 4e-121 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.010G082000 [exp] 200 / 7e-61 AT3G22830 376 / 3e-129 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.008G157600 [exp] 198 / 3e-60 AT3G22830 388 / 3e-134 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Potri.006G115700 [exp] 187 / 4e-54 AT5G03720 308 / 5e-100 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A3, heat shock transcription factor A3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001591 [exp] 382 / 2e-131 AT1G67970 285 / 1e-93 heat shock transcription factor A8 (.1) Lus10003707 [exp] 381 / 4e-131 AT1G67970 282 / 2e-92 heat shock transcription factor A8 (.1) Lus10040091 [exp] 245 / 1e-76 AT1G32330 453 / 1e-156 heat shock transcription factor A1D (.1) Lus10000312 [exp] 244 / 1e-76 AT1G32330 437 / 1e-150 heat shock transcription factor A1D (.1) Lus10011065 [exp] 243 / 5e-76 AT1G32330 441 / 5e-152 heat shock transcription factor A1D (.1) Lus10030956 [exp] 242 / 1e-75 AT1G32330 451 / 1e-155 heat shock transcription factor A1D (.1) Lus10040911 [exp] 219 / 6e-67 AT5G16820 370 / 4e-124 ARABIDOPSIS THALIANA CLASS A HEAT SHOCK FACTOR 1B, ARABIDOPSIS HEAT SHOCK FACTOR 3, heat shock factor 3 (.1.2) Lus10039376 [exp] 207 / 3e-63 AT3G22830 363 / 3e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10006618 [exp] 205 / 5e-62 AT3G22830 352 / 3e-119 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1) Lus10014698 [exp] 189 / 2e-56 AT3G22830 363 / 4e-124 ARABIDOPSIS THALIANA HEAT SHOCK TRANSCRIPTION FACTOR A6B, heat shock transcription factor A6B (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00447 [poplar] [flax] HSF_DNA-bind HSF-type DNA-binding
Representative CDS sequence Show only first row Show all	>Potri.010G104300.3 pacid=42797073 polypeptide=Potri.010G104300.3.p locus=Potri.010G104300 ID=Potri.010G104300.3.v4.1 annot-version=v4.1 ATGGTGAAATCAAGCGAAAGTGGGGTGGCTCCTTTCTTGAAGAAATGCTATGAAATGGTTGATGATGAATCAACAAATTCGATAATCTCATGGAGCCAGA CCAATGACAGCTTTGTTATATGGGACATGACTGAATTCTCTGTCCACTTACTGCCCAAGTACTTCAAGCACAGCAATTCTTCTAGTTTTGTCAGGCAGCT CAATATCTATGGATTTAGAAAAATTGATACAGATCAGTGGGAATTTGCAAATGACGGATTTATCAGAGGGCAGAAACATTTGTTAAAGAATATCTGCAGG AGGAAAAATTCTCAGGGCACAGACAATCGAAAGTCAGTGCAGCAGCAAGACAACTCCATTGAGCATTGTGAAAATGTTGAAAATGTGGGTCTCTGGAAGG AAGTTGAGAGCCTGAAGACAGGTAGAAATGCAGTTACACAGGAGTTGGTTAAGCTCAGGCAGCACCAGGAAACTGCAGACAATAAGTTGCTCCTGTTGAG GGATCGCCTTCAAGGAATGGAAAAAAATCAGCAGCAGATGCTGTCTTTTTTAGTGATGGCAATGCAAAGCCCAGGGTTTCTAGCTCAGCTACTAAACAAA AAGGAAAATAATTGGCGGATAGCTGAGCCAGGAAGCATAGTGGAGCAGGGTGCAGATGATGCTGAGCAGTTGGCTTCTGAGGGAATGATAGTAAGGTACC AGCCACCAGTGGATGAGATGTTCGAGCCTGTACATGCACCGCCAATTGGTCCAGAAAATCCACGAGAATCTAACCCATCTTCCGATGGGATGAAAGATTT TTTTGTGAGTCCAGATTTTATGGAACTTCTTATGGATGAAAATTTGGGTTTTGAAAATCATACCTCGTTTGGTTTACCAGAATTAGCGGATGATGGTTCT TGGGAACAACTGCTTTTAGCCAATCCTTTCATTGAGAATATTAAAGACACCAAACCCGGTTCTGAAGAGAGCACTGATCCTGAAACTGATACCGGAACAA CAATTGTTGGAACGCAGCTGGAGAGATCCCAAAGTTTTGAATATTTAATAGAAATGATGGAGAAGTCCAATGACTTGGAGAACAAAGCAACTGATGAAGG ACCTCACTTTGAGAAGTCTCAGAAATTGGAAATTCTAACTGAGCAGATGGGTCTTTTGGCTTCGGAGCCAAACCACTAA
AA sequence Show only first row Show all	>Potri.010G104300.3 pacid=42797073 polypeptide=Potri.010G104300.3.p locus=Potri.010G104300 ID=Potri.010G104300.3.v4.1 annot-version=v4.1 MVKSSESGVAPFLKKCYEMVDDESTNSIISWSQTNDSFVIWDMTEFSVHLLPKYFKHSNSSSFVRQLNIYGFRKIDTDQWEFANDGFIRGQKHLLKNICR RKNSQGTDNRKSVQQQDNSIEHCENVENVGLWKEVESLKTGRNAVTQELVKLRQHQETADNKLLLLRDRLQGMEKNQQQMLSFLVMAMQSPGFLAQLLNK KENNWRIAEPGSIVEQGADDAEQLASEGMIVRYQPPVDEMFEPVHAPPIGPENPRESNPSSDGMKDFFVSPDFMELLMDENLGFENHTSFGLPELADDGS WEQLLLANPFIENIKDTKPGSEESTDPETDTGTTIVGTQLERSQSFEYLIEMMEKSNDLENKATDEGPHFEKSQKLEILTEQMGLLASEPNH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G67970	HSF	AT-HSFA8	heat shock transcription facto...		Potri.010G104300 [exp]	0	1	Pt-HSF5.1
AT4G28400			Protein phosphatase 2C family ...		Potri.018G150800 [exp]	3.46	0.9021
AT1G69700		ATHVA22C	HVA22 homologue C (.1)		Potri.005G152100 [exp]	3.87	0.8820
AT1G34190	NAC	ANAC017	NAC domain containing protein ...		Potri.005G200100 [exp]	5.83	0.8839
AT2G02800		Kin2, APK2B	protein kinase 2B (.1.2)		Potri.008G148000 [exp]	6.48	0.8675	APK2.2
AT3G24050	GATA	GATA1	GATA transcription factor 1 (....		Potri.001G053500 [exp]	10.09	0.8175
AT2G11520		CRCK3	calmodulin-binding receptor-li...		Potri.018G124600 [exp]	12.64	0.8729	Pt-CRCK3.2
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.002G240000 [exp]	13.63	0.8681
AT3G52870			IQ calmodulin-binding motif fa...		Potri.006G114700 [exp]	17.66	0.8293
AT3G52040			unknown protein		Potri.009G056800 [exp]	18.38	0.8413
AT1G43910			P-loop containing nucleoside t...		Potri.007G019600 [exp]	18.97	0.8472

Compare expression of checked genes

Potri.010G104300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.