Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68020 1415 / 0 ATTPS6 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) AT4G17770 1261 / 0 ATTPS5 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) AT1G06410 1109 / 0 ATTPSA, ATTPS7 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) AT1G60140 1085 / 0 ATTPS10 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1) AT1G23870 1082 / 0 ATTPS9 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) AT1G70290 1076 / 0 ATTPSC, ATTPS8 trehalose-6-phosphatase synthase S8 (.1) AT2G18700 990 / 0 ATTPSB, ATTPS11 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1) AT1G16980 443 / 6e-143 ATTPS2 TREHALOSE -6-PHOSPHATASE SYNTHASE S2, trehalose-phosphatase/synthase 2 (.1) AT1G78580 441 / 8e-141 ATTPS1 TREHALOSE-6-PHOSPHATE SYNTHASE 1, trehalose-6-phosphate synthase (.1) AT4G27550 417 / 2e-133 ATTPS4 ARABIDOPSIS THALIANA TREHALOSE PHOSPHATASE/SYNTHASE 4, trehalose-6-phosphatase synthase S4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G136500 [exp] 1581 / 0 AT1G68020 1410 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Potri.003G094500 [exp] 1326 / 0 AT4G17770 1442 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) Potri.001G139500 [exp] 1291 / 0 AT4G17770 1429 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S5, trehalose phosphatase/synthase 5 (.1) Potri.011G070900 [exp] 1122 / 0 AT1G06410 1343 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Potri.004G061500 [exp] 1117 / 0 AT1G06410 1286 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Potri.012G078500 [exp] 1100 / 0 AT1G23870 1284 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Potri.015G074000 [exp] 1090 / 0 AT1G23870 1285 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Potri.006G175500 [exp] 1014 / 0 AT2G18700 1151 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1) Potri.018G097700 [exp] 999 / 0 AT2G18700 1118 / 0.0 TREHALOSE-6-PHOSPHATE SYNTHASE 11, trehalose phosphatase/synthase 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034585 [exp] 1501 / 0 AT1G68020 1462 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Lus10021805 [exp] 1494 / 0 AT1G68020 1452 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S6, UDP-Glycosyltransferase / trehalose-phosphatase family protein (.1.2) Lus10030853 [exp] 1128 / 0 AT1G60140 1388 / 0.0 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1) Lus10005425 [exp] 1111 / 0 AT1G06410 1338 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10007311 [exp] 1107 / 0 AT1G06410 1347 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10015231 [exp] 1106 / 0 AT1G06410 1337 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10029258 [exp] 1104 / 0 AT1G06410 1338 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S7, trehalose-phosphatase/synthase 7 (.1) Lus10012990 [exp] 1103 / 0 AT1G23870 1345 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1) Lus10030635 [exp] 1100 / 0 AT1G60140 1367 / 0.0 TREHALOSE PHOSPHATE SYNTHASE 10, trehalose phosphate synthase (.1) Lus10029175 [exp] 1099 / 0 AT1G23870 1345 / 0.0 TREHALOSE -6-PHOSPHATASE SYNTHASE S9, trehalose-phosphatase/synthase 9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF00982 [poplar] [flax] Glyco_transf_20 Glycosyltransferase family 20 CL0137 [poplar] [flax] HAD PF08282 [poplar] [flax] Hydrolase_3 haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Potri.010G104500.1 pacid=42799733 polypeptide=Potri.010G104500.1.p locus=Potri.010G104500 ID=Potri.010G104500.1.v4.1 annot-version=v4.1 ATGGTGTCAAGATCATACTCTAATCTTCTGGAGCTTGCCTCTGGCGAGTCTCCATCTTTTGGCCGCATGAGCCGGCGAATTCCTCGGATTATGACGGTGG CAGGCATCATGTCCGATATAGATGATGATCCATCGGAGAGTGTGTGCTCCGATCCATCATCTTCTTCGACTCCAAAGGATCGAATCATAATTGTCGCCAA TCAGCTGCCAATAAGGGCGCAGAGAAAATCAGATGGCAGTAAGTCCTGGATTTTCTCTTGGGATGAGAATTCACTTCTTCTTCAGCTGAAAGATGGTTTA GGGGATGATGAGATTGAGGTTATTTATGTTGGTTGTTTGAAGGAAGAAGTTCACCCTAATGAACAAGATGAGGTCTCCCAAATACTTTTGGAGACCTTCA AATGTGTGCCAACATTTCTCCCACCAGATCTTTTTAGCAGGTATTATCATGGTTTTTGTAAACAACAATTATGGCCTTTGTTTCATTACATGTTGCCCTT GTCGCCTGACCTTGGGGGTAGGTTTAATCGGTCATTGTGGCAAGCGTATGTGTCAGTAAATAAGATATTTGCTGATAGGATTATGGAGGTGATTAATCCA GAGGATGATTTCGTATGGGTTCATGACTATCATCTAATGGCGTTGCCTACTTTCTTGAGGAAGAGGTTTAATAAGGTGAAACTTGGGTTTTTCCTCCATA GTCCATTCCCTTCGTCAGAGATTTATAAGACATTGCCTATTAGAGAAGAGCTCTTGCGAGCTCTGTTGAATTCAGATTTAATTGGGTTCCATACTTTTGA CTACGCTAGACATTTCTTGTCTTGTTGTAGTAGAATGCTTGGCCTTTCCTATGAATCTAAGAGAGGATACATAGGCATCGAGTACTGTGGTAGGACTGTA AGCATCAAAATTCTTCCTGTTGGTATACACATGGGTCAGCTTCAGTCGGTGTTGAGCCTTCCAGAGACTGAAGCAAAGGTCAAGGAGCTCATTAAGCAGT TTAGCGATCAAGATAGGATAATGTTGCTGGGGGTGGATGACATGGACATTTTTAAGGGTATAAGTTTGAAGTTGCTGGCAATGGAACAGTTACTTATGCA GCATCCAGAGTGGCAAGGGAAGATAGTGTTGGTGCAGATAGCGAATCCTGCTAGGGGTAAAGGAAAAGATGTGAAAGAAGTCCAAGCTGAGACACATGCT GCTGTGAAACGGATCAATGAAACATTTGGGAAGCCTGGATATGACCCCATTGTCTTGATTGACGCGCCATTGAAGTTTTACGAGAAAGTGGCCTATTATG TTGTCGCAGAGTGTTGCTTGGTCACTGCTGTAAGGGATGGAATGAATCTCATACCCTATGAATACATAATCAGTCGCCAAGGTAATGATCGATTGAATAA ATTGTTGGGACAAGAACCTTCTACCCCTAAGAAGAGCATGTTGGTCATCTCTGAATTTATTGGCTGCTCTCCATCTTTGAGTGGAGCCATTCGAGTAAAC CCTTGGAATATTGATGCTGTGGCAGATGCAATGGACTTTGCCTTGGAGATGGCAGAACCTGAAAAACAACTCCGACATGAGAAGCATTACCGATATGTCA GTACCCATGATGTTGGGTATTGGGCACGTAGTTTTCTTCAGGATTTGGAGAGGACATGTCGCGATCATTCAAGGAGGAGATGCTGGGGTATTGGATTTGG ACTAAGCTTCAGAGTTGTGGCACTTGATCCTAACTTCAAGAAGCTTTCAATGGAGCGCATTGTGTCAGCTTATAAGAGGACCACAACCAGGGCAATTCTT CTGGATTATGATGGTACACTAATGCCTCAGGCTTCTATTGATAAGAGCCCATCCTCAAAGTCCATTGACATCATAAACAACTTGTGTAGAGATAAGAACA ACATGGTTTTCCTTGTCAGTGCTCGAAGCCGCAACACAGTTGCTGAATGGTTCTCTGAGTGTGAGAAACTGGGATTAGCAGCAGAACATGGCTACTTTCT TAGGCTAAAAAGAGATGCAGAGTGGGAGACACGCGTCCCTGTAGCAGATACCACTTGGAAGCAGATTGCAGAGCCTGTGATGCAGCTTTACACTGAAACA ACAGATGGGTCAACTATCGAGGACAAGGAAACTTCACTAGTATGGTGCTATGAGGATGCAGATCCAGACTTTGGGTCATGCCAAGCAAAAGAACTTCTTG ATCATCTTGAAAGTGTGCTAGCCAATGAACCTGTTACAGTCAAGAGTGGGCAGAACATAGTGGAGGTCAAACCTCAGGGTGTCAGCAAGGGACTTGTAGC CAAACGCCTACTCTCCATCATGCAAGAAAATGAAATGTCACCAGATTTTGTTCTGTGCATTGGCGATGATAGGTCTGATGAAGATATGTTTGAGGTAATA ACCACCTCCATGGCAGGCCCATCAATTGCTGAAAATGCGGAAGTGTTTGCTTGTACTGTTGGTCGAAAACCCAGTAAGGCTAAATATTACCTGGATGACA CAGCAGAAATTGTTAGGTTGATGCAAGGCTTGGCCTCTGTTTCAGAACAAACGGTTACAGTATAG
AA sequence Show only first row Show all	>Potri.010G104500.1 pacid=42799733 polypeptide=Potri.010G104500.1.p locus=Potri.010G104500 ID=Potri.010G104500.1.v4.1 annot-version=v4.1 MVSRSYSNLLELASGESPSFGRMSRRIPRIMTVAGIMSDIDDDPSESVCSDPSSSSTPKDRIIIVANQLPIRAQRKSDGSKSWIFSWDENSLLLQLKDGL GDDEIEVIYVGCLKEEVHPNEQDEVSQILLETFKCVPTFLPPDLFSRYYHGFCKQQLWPLFHYMLPLSPDLGGRFNRSLWQAYVSVNKIFADRIMEVINP EDDFVWVHDYHLMALPTFLRKRFNKVKLGFFLHSPFPSSEIYKTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRMLGLSYESKRGYIGIEYCGRTV SIKILPVGIHMGQLQSVLSLPETEAKVKELIKQFSDQDRIMLLGVDDMDIFKGISLKLLAMEQLLMQHPEWQGKIVLVQIANPARGKGKDVKEVQAETHA AVKRINETFGKPGYDPIVLIDAPLKFYEKVAYYVVAECCLVTAVRDGMNLIPYEYIISRQGNDRLNKLLGQEPSTPKKSMLVISEFIGCSPSLSGAIRVN PWNIDAVADAMDFALEMAEPEKQLRHEKHYRYVSTHDVGYWARSFLQDLERTCRDHSRRRCWGIGFGLSFRVVALDPNFKKLSMERIVSAYKRTTTRAIL LDYDGTLMPQASIDKSPSSKSIDIINNLCRDKNNMVFLVSARSRNTVAEWFSECEKLGLAAEHGYFLRLKRDAEWETRVPVADTTWKQIAEPVMQLYTET TDGSTIEDKETSLVWCYEDADPDFGSCQAKELLDHLESVLANEPVTVKSGQNIVEVKPQGVSKGLVAKRLLSIMQENEMSPDFVLCIGDDRSDEDMFEVI TTSMAGPSIAENAEVFACTVGRKPSKAKYYLDDTAEIVRLMQGLASVSEQTVTV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68020		ATTPS6	TREHALOSE -6-PHOSPHATASE SYNTH...		Potri.010G104500 [exp]	0	1
AT1G11380			PLAC8 family protein (.1)		Potri.011G040100 [exp]	1.00	0.8775
AT1G68020		ATTPS6	TREHALOSE -6-PHOSPHATASE SYNTH...		Potri.008G136500 [exp]	2.00	0.8686
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Potri.002G080066 [exp]	2.00	0.8756
AT2G17020			F-box/RNI-like superfamily pro...		Potri.004G179571 [exp]	3.16	0.8569
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Potri.001G190300 [exp]	3.74	0.8628
AT5G21940			unknown protein		Potri.018G048100 [exp]	8.48	0.8486
AT2G17880			Chaperone DnaJ-domain superfam...		Potri.002G020700 [exp]	15.49	0.8243
AT1G15670			Galactose oxidase/kelch repeat...		Potri.006G196900 [exp]	16.70	0.8699
AT5G04040		SDP1	SUGAR-DEPENDENT1, Patatin-like...		Potri.006G043800 [exp]	18.97	0.8070
AT1G66480		PMI2	plastid movement impaired 2 (....		Potri.017G128800 [exp]	20.78	0.8090

Compare expression of checked genes

Potri.010G104500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.