Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68040 328 / 3e-111 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G15125 320 / 3e-108 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G38100 291 / 2e-96 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT5G37990 290 / 9e-96 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G37970 289 / 5e-95 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT5G38780 278 / 1e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G44840 256 / 4e-83 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G44870 240 / 1e-76 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT1G66700 239 / 2e-76 PXMT1 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.3) AT3G44860 237 / 1e-75 FAMT farnesoic acid carboxyl-O-methyltransferase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G016112 [exp] 449 / 7e-159 AT1G68040 319 / 2e-107 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.019G016102 [exp] 445 / 3e-157 AT1G68040 315 / 6e-106 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G136300 [exp] 401 / 6e-140 AT1G68040 379 / 7e-131 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.012G049900 [exp] 348 / 5e-119 AT1G15125 309 / 1e-103 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.015G041900 [exp] 341 / 2e-115 AT1G68040 275 / 2e-89 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G136200 [exp] 334 / 3e-113 AT1G68040 312 / 1e-104 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.007G089500 [exp] 328 / 2e-111 AT1G15125 283 / 5e-94 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G122900 [exp] 328 / 5e-111 AT1G15125 295 / 5e-98 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.017G122950 [exp] 323 / 3e-109 AT1G15125 321 / 4e-108 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043177 [exp] 228 / 2e-71 AT5G55250 532 / 0.0 IAA carboxylmethyltransferase 1 (.1.2) Lus10021802 [exp] 217 / 2e-68 AT1G68040 203 / 6e-63 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036547 [exp] 212 / 1e-65 AT5G66430 243 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036550 [exp] 210 / 7e-65 AT3G11480 249 / 8e-80 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10041380 [exp] 204 / 8e-63 AT4G36470 278 / 4e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10028500 [exp] 199 / 3e-61 AT5G37990 187 / 6e-57 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10036548 [exp] 205 / 2e-60 AT5G66430 250 / 1e-77 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10025993 [exp] 196 / 9e-59 AT1G19640 288 / 1e-93 jasmonic acid carboxyl methyltransferase (.1) Lus10041776 [exp] 192 / 5e-58 AT4G36470 421 / 3e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10024671 [exp] 181 / 3e-53 AT5G66430 280 / 2e-91 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF03492 [poplar] [flax] Methyltransf_7 SAM dependent carboxyl methyltransferase
Representative CDS sequence Show only first row Show all	>Potri.010G104800.1 pacid=42797940 polypeptide=Potri.010G104800.1.p locus=Potri.010G104800 ID=Potri.010G104800.1.v4.1 annot-version=v4.1 ATGAACGGTGGAAATGGAACATACAGCTATGCCAAAAACTCCACCTTACAGAGAAAATCAGCAAATGCTGTGAGGGAAAAAATTGATGAGGCAATTGCAG AGAAACTTGATATGGAAACCCTATGTTCTAGCGGAAAGTCATTTCATATTGCAGATTTTGGATGTTCAACCGGACCCAATACGTTTATAGCAATGCAAAA TATACTGGAATCTGTAGAAAGGAAATACAAATCCCAGTGCCCTACTCGTCAAATTCCGGAATTCCAAGCATTTTTTAATGACCAAGCATCGAATGATTTC AACACCCTCTTCACCACTCTCCCACTGGATAGGCAATACTTTGTAGCCGGTGTGCCCGGGTCTTTCCATGGCCGGTTGTTTCCTGATAGCTCTCTTCATT TTGCTTATTCCTCTACTGCACTACACTGGCTCTCTAAGGTGCCAGAAGAATTGCTAGACAAGAACTCTCCTTCATTTAATAAGGGAAGGATTTACTATTC GAATACCCTGGATAAAGTGGTTGATGCTTATTCTTCTCAATTTGCTAAGGACATGGAAATCTTTTTGGATGCCAGAGCAAAAGAGCTTGTTGCTGGAGGA ATGTTGGTGATGACGATGCCTGGCCAGCCTAATGGAATCCCTTGTTGCCAAACAGGGATGGGAATGACTATAGATTATTTGGAGTCTTGCTTCTTGGACA TGGTGAACGAGGGTATAATAAGTGAAGCTAAAGTGGACTCTTTCAACTTGCCAATGTATTCGGCGACTCTGGAAGAGATGAAAGAGTTAATACAAAGAAA TGGGTCTTTTAACGTTGAGAAAATGGAGTTGACAATGGCAAACGGAGAATCAAATCCTCAAAGTTATAGCTCTTACTCGGGGCGAATGCTCCAAATGCAC TTGAGAGCTGGGATAGAGGAAATAATCAGTAAACATTTTGGAACTGAGATTATTGATGACTTGTTTGATCGCTATGCTATGAAAGCTGAGGACTTTTCCC ATCGTCTGCAATCAAGCGAGAGGAAAGGAGCTCTATTGTTTGTTGTTTTGAAACGCAAATGA
AA sequence Show only first row Show all	>Potri.010G104800.1 pacid=42797940 polypeptide=Potri.010G104800.1.p locus=Potri.010G104800 ID=Potri.010G104800.1.v4.1 annot-version=v4.1 MNGGNGTYSYAKNSTLQRKSANAVREKIDEAIAEKLDMETLCSSGKSFHIADFGCSTGPNTFIAMQNILESVERKYKSQCPTRQIPEFQAFFNDQASNDF NTLFTTLPLDRQYFVAGVPGSFHGRLFPDSSLHFAYSSTALHWLSKVPEELLDKNSPSFNKGRIYYSNTLDKVVDAYSSQFAKDMEIFLDARAKELVAGG MLVMTMPGQPNGIPCCQTGMGMTIDYLESCFLDMVNEGIISEAKVDSFNLPMYSATLEEMKELIQRNGSFNVEKMELTMANGESNPQSYSSYSGRMLQMH LRAGIEEIISKHFGTEIIDDLFDRYAMKAEDFSHRLQSSERKGALLFVVLKRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68040			S-adenosyl-L-methionine-depend...		Potri.010G104800 [exp]	0	1
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.018G033500 [exp]	1.41	0.9993	PtrAMT4-2
AT4G12420		SKU5	Cupredoxin superfamily protein...		Potri.008G032200 [exp]	3.16	0.9990
AT1G59740			Major facilitator superfamily ...		Potri.004G064100 [exp]	3.46	0.9988
AT3G08680			Leucine-rich repeat protein ki...		Potri.011G088000 [exp]	4.89	0.9987
					Potri.003G126200 [exp]	5.00	0.9986
AT5G45890		SAG12	senescence-associated gene 12 ...		Potri.011G064900 [exp]	5.91	0.9982
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.001G326000 [exp]	6.00	0.9982
					Potri.014G081800 [exp]	7.07	0.9977
AT1G04110		SDD1	STOMATAL DENSITY AND DISTRIBUT...		Potri.003G118700 [exp]	7.48	0.9975
AT1G21270		WAK2	wall-associated kinase 2 (.1)		Potri.004G191450 [exp]	7.93	0.9978

Compare expression of checked genes

Potri.010G104800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.