Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RDR903
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14790 1278 / 0 ATRDRP1, RDR1 RNA-dependent RNA polymerase 1 (.1) AT4G11130 750 / 0 SMD1, RDR2 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) AT3G49500 557 / 3e-179 SDE1, SGS2, RDR6 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) AT2G19920 84 / 6e-16 RNA-dependent RNA polymerase family protein (.1) AT2G19910 79 / 2e-14 RNA-dependent RNA polymerase family protein (.1) AT2G19930 76 / 1e-13 RNA-dependent RNA polymerase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G105200 [exp] 2212 / 0 AT1G14790 1298 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.008G135800 [exp] 1642 / 0 AT1G14790 1205 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.008G136100 [exp] 1404 / 0 AT1G14790 1448 / 0.0 RNA-dependent RNA polymerase 1 (.1) Potri.015G073700 [exp] 780 / 0 AT4G11130 1422 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Potri.018G028100 [exp] 578 / 0 AT3G49500 1753 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Potri.006G253500 [exp] 557 / 3e-179 AT3G49500 1739 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Potri.006G164400 [exp] 93 / 7e-19 AT2G19930 861 / 0.0 RNA-dependent RNA polymerase family protein (.1) Potri.007G081300 [exp] 92 / 2e-18 AT2G19930 868 / 0.0 RNA-dependent RNA polymerase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019164 [exp] 1314 / 0 AT1G14790 1447 / 0.0 RNA-dependent RNA polymerase 1 (.1) Lus10042134 [exp] 717 / 0 AT4G11130 1368 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Lus10002017 [exp] 590 / 0 AT3G49500 1605 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Lus10002910 [exp] 558 / 0 AT3G49500 1203 / 0.0 SUPPRESSOR OF GENE SILENCING 2, SILENCING DEFECTIVE 1, RNA-dependent RNA polymerase 6 (.1) Lus10002361 [exp] 404 / 3e-128 AT4G11130 659 / 0.0 SILENCING MOVEMENT DEFICIENT 1, RNA-dependent RNA polymerase 2 (.1) Lus10034262 [exp] 348 / 4e-110 AT1G14790 381 / 2e-123 RNA-dependent RNA polymerase 1 (.1) Lus10034390 [exp] 122 / 2e-32 AT1G14790 147 / 2e-42 RNA-dependent RNA polymerase 1 (.1) Lus10034391 [exp] 111 / 1e-28 AT1G14790 87 / 3e-21 RNA-dependent RNA polymerase 1 (.1) Lus10012965 [exp] 84 / 4e-16 AT2G19930 645 / 0.0 RNA-dependent RNA polymerase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05183 [poplar] [flax] RdRP RNA dependent RNA polymerase
Representative CDS sequence Show only first row Show all	>Potri.010G104900.1 pacid=42797881 polypeptide=Potri.010G104900.1.p locus=Potri.010G104900 ID=Potri.010G104900.1.v4.1 annot-version=v4.1 ATGGCAAAGACAATTAGCTTGTATGGTTTTCCTACTGTTGAACCTCCAGATGACATAAAGGAATTTCTGGAAGAATACTCTGGTGAAGGTACAGTTGTAG CTGTTCATGTTGCACAACCAAAAAGTGCAGGGTCAAGAACAAATGCTATAGTTGAATTCACAACCAGTGAAGCTGCTCAAAATATCAAGCTCAAGTCCTT AGATGATGAAGGTCTATGGTATGGTAATTCTTATCTGAAAGCGCGGGATGTGTATCGCGATACTGTTCCAATGAGAAAGGCCTTTCAGACTCAGTATAGC ATGGATAACATAACACTGCACTTCGGATGTCAGGTTTCAAAGGAAAAATTCTCAGTTCTTTGGACTCAAAAAGATGTTTCGGTAAAATTTGGTGTTGAAC TGAGGAAATTCCATTTCTTTCTGACGCATCTTTCAAAAAATTACAAGCTCGAGCTATCATATGAGAACATTTTTCAAATTGAGCTGCATCGACCTCGTGG AAAAACTAAGAAATATCTTCTCGTCCAGATGCTCGGAGGCCCCAAGATTTTTAAGAAAGACACGAATAAGCTCAGCAATTTTAAGGAAGCTACTGATGAT CAGTGGGTTCGAGATGTTGATTTTTCTCCATCTTACTGCATAGGCCAATCTTCTGCTTTGTGCTTGGAGCTTCCGCCCAACAGCCAACTTCCGAATTTTC AGGAAAATTTTGTCTGTTACAAAGAAGATGAAGGCCACTTCATTCTGGAAAAAGGATCAACCTTCTGTTGCAAGTCAGATCTTGTTCCTATTTTGAGTGC AGCTCAAGTATCTGAACTTCCATATGACATTGTGTTTAAAGTCAATTCCTTGGTCCAGCATGGTTGTCTTCCTGGACCAGCACTTGATGCAAGGTTCTTT CGTTTGATCAATCCATCTAAAATTCGTATTGCGCATGCATACATACAACATGCCCTTGAGAAGCTAAGTCATTTGAAGGAATGCTGTTATGATCCTGCAC GATGGCTCCGGGAGCAATACCAGAAATACCTCACCACTGGCAGACTTCCTACACCACCTGCTATTGCTGTAGATGATGGGTTGGTATTTTTACGTAGGGT TCAGATAACCCCTACTAAATTGTACTTCTGTGGCCCAGACGTGAATCTCTCCAATCGTGTTTTACGCAAATATCCTGGTGATATTGATAACTTTCTTCGG GTTTCTTTTGTTGACGAGGATCTTGATAAACTTTTTTCTGCAAATATATCGCCACGGACATTTTCTGCAATTGAGGGGAGGCAAACCAACATTTATCAAA GGATACTGTCAGTTCAAAGAAATGGCATAACTATCGGATCTAAGAAGTTTGAGTTTCTTGGTTTCTCACAGAGTCAAGTACGGGAGAGTTCTCTTTGGAT GTTTGCTTCTAGACCTGGGCTCACAGCAGCAGACATTAGAGAATGGATGGGTGATTTTCGTGAAATAAAGAATGTGGCCAAATATGCTGCAAGGCTTGGC CAGTCTTTCAGCTCATCGAGGGAAAGTTTCAACATTGATAGGCATGAAATAGAAATTATTCCTGATATAGAGGTTAAAAGCGGTGGAGTCAACTATGTAT TCTCTGATGGTATTGGAAAAATTTCAGCAGAATTGGCAGATAGCATAGCTCGGAAACTTGGCTTTAGAAGTTTTACTCCTTCTGCCTTTCAGATTAGGTA CGGAGGCTACAAAGGTGTTGTGGCTGTTGATCCTACTTCATCAATGAAATTGTCACTGAGGAGAAGTATGTCCAAGTACAAATCAACTAACACTAGCTTG GATATTTTGGATTGGAGCAAGTATCGGGCTTGTTTTCTCAATCGTGAAGTGATCATTCTTTTATCTACCCTTGGGGTTAAAGATCAAGTTTTTGAAAGGA AGCAAAAGGAGGCTATAGCTCAACTAGATGCTATTTTAACCGATCCAATAAAAGCACAGGAGGCACTTGAGTTGATGGCTGGTGGAGAGAACGCACGTGT TCTGAATGGAATGCTTGCATGCGGTTATAAGCCGGGTGCAGAGCCATTTCTAGCAATGATGCTGGAAACACTCCGCGCATTGAAGTTGCTTGATTTGCGG ACAAAATCAAGAATATTTGTTCCAAACGGAAGAGCAATGACGGGATGTCTGGATGAAACCAGGACGTTGGAATATGGTCAAGCATTTGTCCAGTATTCTC GTGCTAGATTTAGGAAGTTACATGATCATTTCAAAGGTGGCAAAACAGATCAACATACTCTGATTTTTAGGGGAAAGATAGTTGTTGCGAAAAACCCCTG TCTACACCCAGGAGACGTGCAGATCTTAGAGGCTGTGGATGTGCCGGCTTTACATCACATGGTGGATTGCATCGTTTTCCCCCAAAAAGGAAAGAGACCT CATACAAATGAATGCTCGGGAAGTGATCTAGATGGAGATGTGTACTTTGTATGTTGGGATTCGGATCTCATTCCTCCTCAGAAATTTCCACCCATGGATT ACGCTGCACCACAAACTACGATTTTGGACCACGATGTTACAATAGAGGAAGTTCAGGAGTATTTTACAGATTACCTACTCAACGACAACTTAGGGATCAT TTGCAGTGCTCACGTGGTCTTTGCAGACAGTGAGCCTGACATGGCAAGAAGTGAAAAATGTATTGAGCTTGCTCAGCTATCCTCAATCGCTGTTGACTTC CCAAAAACCGGTGTGCCTGCTAAAATTCCTAAAGAACTACGCGTCAAAGAATATCCAGATTTTATGGAGAAGGCTGCATATAAACATACTACCTATGTAT CTCAGCGTGTACTTGGAAAGCTTTTTCGAGCTGTAAGAGACATCGCACCGGACACAAGTCCTGTAAGACCCTTCACTAAGGAAGCGGCAAAGCGGTCTTA TGACCCTGACATGGAAGTTGATGGATTTAAGGATTATATCAACGAGGCTTTCTATTACAAAAGTGAATACGACAACAAACTGGGGAACATGATGGACTAT TACGGGATCAAGACTGAGGCTGAAATAATCGGTGGTTGCATCATGAGAATGGGAAGATCTTTTGATAAGAAAAAGGACTTGGAAGGCATTAATTTTTCTG TAAGTTCCTTGAGGAAGCAAGCTAGAGCCTGGTTCAACGAGAGCGGCTCAAAGGAAAGCCCTGATGATGTTTATCCAAAGGCATCAGCTTGGTACCACGT CACATATCATCCTCGTTTTTGGGGCCTCTACAACGAGGGAATGGATCGAGTTCATTTCCTCAGTTTTCCCTGGTGTGTTCATGACAAACTTTTTGAGATT AAGAAGGGCACGACATCACTGGTGCACCAGCTCAAACGAATGGCGAGCTTTCATGTAGAGATCGGAGACTAG
AA sequence Show only first row Show all	>Potri.010G104900.1 pacid=42797881 polypeptide=Potri.010G104900.1.p locus=Potri.010G104900 ID=Potri.010G104900.1.v4.1 annot-version=v4.1 MAKTISLYGFPTVEPPDDIKEFLEEYSGEGTVVAVHVAQPKSAGSRTNAIVEFTTSEAAQNIKLKSLDDEGLWYGNSYLKARDVYRDTVPMRKAFQTQYS MDNITLHFGCQVSKEKFSVLWTQKDVSVKFGVELRKFHFFLTHLSKNYKLELSYENIFQIELHRPRGKTKKYLLVQMLGGPKIFKKDTNKLSNFKEATDD QWVRDVDFSPSYCIGQSSALCLELPPNSQLPNFQENFVCYKEDEGHFILEKGSTFCCKSDLVPILSAAQVSELPYDIVFKVNSLVQHGCLPGPALDARFF RLINPSKIRIAHAYIQHALEKLSHLKECCYDPARWLREQYQKYLTTGRLPTPPAIAVDDGLVFLRRVQITPTKLYFCGPDVNLSNRVLRKYPGDIDNFLR VSFVDEDLDKLFSANISPRTFSAIEGRQTNIYQRILSVQRNGITIGSKKFEFLGFSQSQVRESSLWMFASRPGLTAADIREWMGDFREIKNVAKYAARLG QSFSSSRESFNIDRHEIEIIPDIEVKSGGVNYVFSDGIGKISAELADSIARKLGFRSFTPSAFQIRYGGYKGVVAVDPTSSMKLSLRRSMSKYKSTNTSL DILDWSKYRACFLNREVIILLSTLGVKDQVFERKQKEAIAQLDAILTDPIKAQEALELMAGGENARVLNGMLACGYKPGAEPFLAMMLETLRALKLLDLR TKSRIFVPNGRAMTGCLDETRTLEYGQAFVQYSRARFRKLHDHFKGGKTDQHTLIFRGKIVVAKNPCLHPGDVQILEAVDVPALHHMVDCIVFPQKGKRP HTNECSGSDLDGDVYFVCWDSDLIPPQKFPPMDYAAPQTTILDHDVTIEEVQEYFTDYLLNDNLGIICSAHVVFADSEPDMARSEKCIELAQLSSIAVDF PKTGVPAKIPKELRVKEYPDFMEKAAYKHTTYVSQRVLGKLFRAVRDIAPDTSPVRPFTKEAAKRSYDPDMEVDGFKDYINEAFYYKSEYDNKLGNMMDY YGIKTEAEIIGGCIMRMGRSFDKKKDLEGINFSVSSLRKQARAWFNESGSKESPDDVYPKASAWYHVTYHPRFWGLYNEGMDRVHFLSFPWCVHDKLFEI KKGTTSLVHQLKRMASFHVEIGD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Potri.010G104900 [exp]	0	1	RDR903
AT1G14790		ATRDRP1, RDR1	RNA-dependent RNA polymerase 1...		Potri.010G105200 [exp]	1.00	0.9452
					Potri.001G444350 [exp]	4.24	0.9369
AT5G54160		ATOMT1	O-methyltransferase 1 (.1)		Potri.014G106500 [exp]	6.32	0.9063	Pt-RCOMT1.3
AT3G18670			Ankyrin repeat family protein ...		Potri.004G003600 [exp]	6.48	0.9070
AT3G61172		LCR8	low-molecular-weight cysteine-...		Potri.016G061600 [exp]	11.35	0.9213
AT5G03970			F-box associated ubiquitinatio...		Potri.005G124500 [exp]	14.49	0.8552
AT5G43240			Protein of unknown function (D...		Potri.001G247300 [exp]	15.87	0.8974
AT3G50120			Plant protein of unknown funct...		Potri.001G071400 [exp]	18.65	0.9162
					Potri.004G221400 [exp]	22.44	0.9058
AT3G20570		AtENODL9	early nodulin-like protein 9 (...		Potri.001G419200 [exp]	23.76	0.9087

Compare expression of checked genes

Potri.010G104900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.