Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14810 596 / 0 semialdehyde dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G105300 [exp] 688 / 0 AT1G14810 629 / 0.0 semialdehyde dehydrogenase family protein (.1) Potri.008G135700 [exp] 660 / 0 AT1G14810 617 / 0.0 semialdehyde dehydrogenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013239 [exp] 622 / 0 AT1G14810 622 / 0.0 semialdehyde dehydrogenase family protein (.1) Lus10030759 [exp] 622 / 0 AT1G14810 603 / 0.0 semialdehyde dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF01118 [poplar] [flax] Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain CL0139 [poplar] [flax] GADPH_aa-bio_dh PF02774 [poplar] [flax] Semialdhyde_dhC Semialdehyde dehydrogenase, dimerisation domain
Representative CDS sequence Show only first row Show all	>Potri.010G105000.1 pacid=42799750 polypeptide=Potri.010G105000.1.p locus=Potri.010G105000 ID=Potri.010G105000.1.v4.1 annot-version=v4.1 ATGGCCCTTCAAGAAAACGCCCCCTCTCTCGCTGTGGTTGGTGTCACTGGTGCTGTCGGTCAAGAATTTCTCTCTGTCCTCTCTGACCGTGACTTCCCTT ACCGCTCCATTAAAATGCTGGCCTCCAAGCGCTCTGCTGGCAAGCAGCTCACTTTCCAAGACAGGAATTACACGATTGAAGAGCTAACTGAAGATAGCTT TGATGGGGTTGATATTGCGCTTTTCAGTGCTGGTGGGTCTATTAGTAAGCATTTTGGGCCGGTGGCAGTGGAGAAGGGATCCGTTGTGGTGGATAATAGC TCGGCTTTTAGAATGGAAGAAGGGATTCCTTTGGTGATTCCTGAGGTTAATCCAGAGGCTATGGAAGGGATTAAAGTTGGGACGGGAAAGGGTGCTTTGA TTGCCAATCCAAATTGTTCAACTATTATTTGCTTGATGGCTGCTACTCCTTTGCATAAGCATGCCAAGGTGATACGAATGGTTGTTAGTACATATCAAGC AGCCAGTGGTGCTGGTGCTGCTGCAATGGAAGAGCTTGAGTTGCAGACTCGTGAGGTCTTGGAAGGAAAACCACCCACTTGCAACATCTTTAAGCAACAG TATGCTTTTAACTTGTTTTCACATAATGCTCCTATTCTATCAAATGGATACAACGAAGAGGAAATGAAATTAGTTAAAGAAACCAGAAAGATCTGGAATG ATATGAATGTTAAAGTCACTGCTACATGTATACGTGTTCCTGTCATGCGTGCACATGCTGAAAGTGTTAATCTTCAATTTGAGAAGCCCATTGACGAGTA TACAGCAAAAGATATTTTGAAAAGTGCTCCTGGGGTGGTGGTTATTGATGACCCAGCATCTAATCACTTTCCTACACCTTTGGAGGTATCAAACAAAGAT GATGTTGCAGTTGGCAGGATTCGTCGTGATGTGTCGCAAGATGGATATAAAGGGCTGGATATATTTGTCTGTGGTGATCAAATACGCAAAGGAGCTGCAC TTAATGCTATTCAGATTGCCGAGATGCTGCTATAG
AA sequence Show only first row Show all	>Potri.010G105000.1 pacid=42799750 polypeptide=Potri.010G105000.1.p locus=Potri.010G105000 ID=Potri.010G105000.1.v4.1 annot-version=v4.1 MALQENAPSLAVVGVTGAVGQEFLSVLSDRDFPYRSIKMLASKRSAGKQLTFQDRNYTIEELTEDSFDGVDIALFSAGGSISKHFGPVAVEKGSVVVDNS SAFRMEEGIPLVIPEVNPEAMEGIKVGTGKGALIANPNCSTIICLMAATPLHKHAKVIRMVVSTYQAASGAGAAAMEELELQTREVLEGKPPTCNIFKQQ YAFNLFSHNAPILSNGYNEEEMKLVKETRKIWNDMNVKVTATCIRVPVMRAHAESVNLQFEKPIDEYTAKDILKSAPGVVVIDDPASNHFPTPLEVSNKD DVAVGRIRRDVSQDGYKGLDIFVCGDQIRKGAALNAIQIAEMLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G14810			semialdehyde dehydrogenase fam...		Potri.010G105000 [exp]	0	1
AT1G14810			semialdehyde dehydrogenase fam...		Potri.010G105300 [exp]	1.00	0.9402
AT4G27490			3'-5'-exoribonuclease family p...		Potri.004G212500 [exp]	8.94	0.8233
AT5G51600		ATMAP65-3, PLE	PLEIADE, ARABIDOPSIS THALIANA ...		Potri.006G269800 [exp]	19.89	0.7945
AT4G09800		RPS18C	S18 ribosomal protein (.1)		Potri.002G064632 [exp]	21.16	0.7254
AT2G36530		ENO2, LOS2	LOW EXPRESSION OF OSMOTICALLY ...		Potri.012G129300 [exp]	51.81	0.7657
AT4G23630		RTNLB1, BTI1	Reticulan like protein B1, VIR...		Potri.012G035600 [exp]	56.23	0.7443
					Potri.017G026800 [exp]	60.79	0.7419
					Potri.016G120333 [exp]	87.90	0.7006
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Potri.018G146300 [exp]	145.78	0.7214	ACCC.1
AT3G06740	GATA	GATA15	GATA transcription factor 15 (...		Potri.008G213900 [exp]	148.43	0.6836

Compare expression of checked genes

Potri.010G105000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.