Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATCPSF73.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01730 898 / 0 ATCPSF73-II, EDA26 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) AT1G61010 321 / 3e-100 CPSF73-I cleavage and polyadenylation specificity factor 73-I (.1.2.3) AT5G23880 148 / 4e-37 ATCPSF100, EMB1265, ESP5, CPSF100 ENHANCED SILENCING PHENOTYPE 5, EMBRYO DEFECTIVE 1265, cleavage and polyadenylation specificity factor 100 (.1) AT5G63420 56 / 6e-08 Trihelix EMB2746 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) AT3G07530 47 / 3e-05 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G076132 [exp] 311 / 3e-96 AT1G61010 1237 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Potri.017G076000 [exp] 310 / 6e-96 AT1G61010 1236 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Potri.017G076300 [exp] 257 / 1e-76 AT1G61010 1093 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Potri.001G231800 [exp] 141 / 5e-35 AT5G23880 1172 / 0.0 ENHANCED SILENCING PHENOTYPE 5, EMBRYO DEFECTIVE 1265, cleavage and polyadenylation specificity factor 100 (.1) Potri.012G095800 [exp] 59 / 1e-08 AT5G63420 1300 / 0.0 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) Potri.015G093600 [exp] 56 / 1e-07 AT5G63420 1230 / 0.0 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) Potri.014G160600 [exp] 45 / 9e-05 AT2G04530 528 / 0.0 TRNASE Z 2, Metallo-hydrolase/oxidoreductase superfamily protein (.1) Potri.004G236000 [exp] 45 / 0.0001 AT3G07530 674 / 0.0 unknown protein Potri.015G064400 [exp] 45 / 0.0001 AT1G74700 462 / 4e-166 tRNAse Z1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035763 [exp] 860 / 0 AT2G01730 755 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Lus10037338 [exp] 832 / 0 AT2G01730 732 / 0.0 embryo sac development arrest 26, cleavage and polyadenylation specificity factor 73 kDa subunit-II (.1) Lus10015460 [exp] 226 / 1e-65 AT1G61010 940 / 0.0 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Lus10035061 [exp] 125 / 2e-29 AT5G23880 1182 / 0.0 ENHANCED SILENCING PHENOTYPE 5, EMBRYO DEFECTIVE 1265, cleavage and polyadenylation specificity factor 100 (.1) Lus10021705 [exp] 123 / 6e-29 AT5G23880 1202 / 0.0 ENHANCED SILENCING PHENOTYPE 5, EMBRYO DEFECTIVE 1265, cleavage and polyadenylation specificity factor 100 (.1) Lus10001371 [exp] 65 / 4e-12 AT1G61010 206 / 5e-68 cleavage and polyadenylation specificity factor 73-I (.1.2.3) Lus10016758 [exp] 54 / 4e-07 AT5G63420 1222 / 0.0 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) Lus10022454 [exp] 52 / 2e-06 AT5G63420 1223 / 0.0 embryo defective 2746, RNA-metabolising metallo-beta-lactamase family protein (.1) Lus10040483 [exp] 49 / 1e-05 AT3G07530 548 / 0.0 unknown protein Lus10014623 [exp] 47 / 3e-05 AT2G04530 543 / 0.0 TRNASE Z 2, Metallo-hydrolase/oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0398 [poplar] [flax] RMMBL_DRMBL PF07521 [poplar] [flax] RMMBL Zn-dependent metallo-hydrolase RNA specificity domain CL0023 [poplar] [flax] P-loop_NTPase PF10996 [poplar] [flax] Beta-Casp Beta-Casp domain CL0381 [poplar] [flax] Metallo-HOrase PF16661 [poplar] [flax] Lactamase_B_6 Metallo-beta-lactamase superfamily domain
Representative CDS sequence Show only first row Show all	>Potri.010G106200.1 pacid=42798039 polypeptide=Potri.010G106200.1.p locus=Potri.010G106200 ID=Potri.010G106200.1.v4.1 annot-version=v4.1 ATGGCTATCGAATGCCTCGTCCTCGGTGCTGGGCAGGAAGTTGGGAAAAGCTGTGTGGTAGTCACAATCAACGGCAAACGGATAATGTTCGATTGTGGAA TGCACATGGGCTATGATGATCATCGTCGCTACCCTGACTTCTCTCTCATCTCTAAATCCAGAGATTTTGACCATTCCCTCGACTGCGTCATCATCACTCA CTTTCATCTGGATCATGTTGGTGCTCTTCCTTACTTCACTGAAGTTTGTGGTTATAATGGACCTATTTACATGACGTATCCTACAAAGGCACTAGCTCCT TTGATGTTGGAGGATTTTAGGAAAGTGTTGGTTGATAGAAGGGGTGAGGAAGAGCAATTTACTTCTCTTCATATTTCACAATGCATGGAAAAAGTCATAG CAGTGGATCTGAAGCAGACTGTGCAGGTTGATGATGATCTTCAGATCCGTGCCTATTATGCTGGACATGTTCTTGGAGCTGCAATGTTTTATGCAAAGGT GGGAGACAGTGCTATGGTGTACACAGGAGACTATAATATGACCCCAGATAGACATCTGGGAGCAGCTCAAATTGATCGACTTGAACTAGACCTCCTTATA ACAGAGTCTACATATGCAACAACTATCCGGGATTCAAAGTATGCTCGAGAAAGAGAATTTCTCAAGGCTGTCCATGAATGTGTTGCTGGAGGAGGAAAGG TGCTTATTCCTACATTTGCGCTTGGAAGAGCTCAGGAACTCTGTATATTGTTGGATGACTACTGGGAGCGTATGAATCTCAAGGTTCCTATATACTTCTC AGCTGGTTTGACCATTCAAGCAAATCTGTATTATAAAATACTTATCAGCTGGACCAGCCAGAAGGTCAAGGAGACATATGCTACACGGAATGCATTTGAT TTTAAACATGTTCACAATTTTGATCGTTCTCTGATAAATGCTCCTGGACCTTGTGTTCTCTTTGCAACACCTGGGATGATTAGTGGTGGATTTTCACTTG AGGTTTTTAAACAATGGGCTCCTTGTGAAATGAATCTTATAACATTGCCTGGATATTGTGTGGCTGGAACTGTAGGACATAAATTGATGTCGGGTAAACC TACTAAAATTAATTTGGACAAGGACACCCAGATTGATGTGCGATGCCAGATTCACCAATTGTCTTTCAGTCCTCATACAGACAGCAAAGGAATCATGGAT CTTACCAAATTTCTCTCGCCTAGGAATGTGATATTGGTACATGGTGAGAAGCCTAAAATGGTTTCTCTTAAAGAAAGAATACAGACCGAACTGAGAATTC CATGTTATCTTCCCGCCAATTGTGATGCTGTGCACATTCCTTCGACTATCTATGTGAAAGCACATGCCTCAAACACATTTATCCGCAGTTGCTTGAATCC TAATTTCAGGTTCTTAAAAAGAAGTAAAGAAGACAATTCTGATCAAGTTTTAAGAAACACAAATCCCACTGCCCCACTGCAGGTAAATGATGAAAGAGTT GCTGAAGGGATCTTGATTATGGAAAAAGGCAAAAAAGCAAGGGTTGTACACCAAGATGATCTACTGCTCATGTTGAGACAGAAGAAGCACGACGTTCAGT TTGCGTATTGTTGTGCTGCACAACTTGACAACTTGGAAGAGACTAGAAACAGAGATGATGCGCTTGGTCTTTCCGACAAGTGCTCTAGTCTCCAGCTATT GTTTAAAGAACTTTCAAATTATTTTTCTGGAGTAAACATCGAAGATCTTGGGGAACATCTTCAAGTGGAGTCATTTCATGTGTCTGTCTGTTTGAAGGAC AACTGCCCATACAGAATAATTGATAATTCTCAAAAAGAAGCAGTGACAGTATATTTTTGCTGCAGTTGGTCTGCAGCAGATGAAAAGCTTGCCTGGGAGA TCATTTCAGCCATGGAAAGATTCAATTTAATTGACAATTTACCATGCAGAAATTCCATTTCAAGTACAAATTGA
AA sequence Show only first row Show all	>Potri.010G106200.1 pacid=42798039 polypeptide=Potri.010G106200.1.p locus=Potri.010G106200 ID=Potri.010G106200.1.v4.1 annot-version=v4.1 MAIECLVLGAGQEVGKSCVVVTINGKRIMFDCGMHMGYDDHRRYPDFSLISKSRDFDHSLDCVIITHFHLDHVGALPYFTEVCGYNGPIYMTYPTKALAP LMLEDFRKVLVDRRGEEEQFTSLHISQCMEKVIAVDLKQTVQVDDDLQIRAYYAGHVLGAAMFYAKVGDSAMVYTGDYNMTPDRHLGAAQIDRLELDLLI TESTYATTIRDSKYAREREFLKAVHECVAGGGKVLIPTFALGRAQELCILLDDYWERMNLKVPIYFSAGLTIQANLYYKILISWTSQKVKETYATRNAFD FKHVHNFDRSLINAPGPCVLFATPGMISGGFSLEVFKQWAPCEMNLITLPGYCVAGTVGHKLMSGKPTKINLDKDTQIDVRCQIHQLSFSPHTDSKGIMD LTKFLSPRNVILVHGEKPKMVSLKERIQTELRIPCYLPANCDAVHIPSTIYVKAHASNTFIRSCLNPNFRFLKRSKEDNSDQVLRNTNPTAPLQVNDERV AEGILIMEKGKKARVVHQDDLLLMLRQKKHDVQFAYCCAAQLDNLEETRNRDDALGLSDKCSSLQLLFKELSNYFSGVNIEDLGEHLQVESFHVSVCLKD NCPYRIIDNSQKEAVTVYFCCSWSAADEKLAWEIISAMERFNLIDNLPCRNSISSTN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01730		ATCPSF73-II, ED...	embryo sac development arrest ...		Potri.010G106200 [exp]	0	1	ATCPSF73.1
AT2G41080			Tetratricopeptide repeat (TPR)...		Potri.016G075000 [exp]	1.41	0.8482
AT5G35930			AMP-dependent synthetase and l...		Potri.019G043800 [exp]	4.24	0.7950
AT2G03667			Asparagine synthase family pro...		Potri.010G157700 [exp]	16.12	0.7059
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Potri.006G119600 [exp]	17.77	0.7905
AT4G10320			tRNA synthetase class I (I, L,...		Potri.017G033200 [exp]	20.00	0.7444
AT1G33410		NUP160, SAR1, A...	ARABIDOPSIS NUCLEOPORIN 160, S...		Potri.001G078600 [exp]	21.72	0.7960
AT5G40480		EMB3012	embryo defective 3012 (.1)		Potri.001G345100 [exp]	28.14	0.7347
AT5G56310			Pentatricopeptide repeat (PPR)...		Potri.003G223900 [exp]	30.85	0.7456
AT2G36810			ARM repeat superfamily protein...		Potri.006G120800 [exp]	32.86	0.7026
AT5G01660			unknown protein		Potri.016G127600 [exp]	34.78	0.6791

Compare expression of checked genes

Potri.010G106200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.