Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68070 413 / 1e-144 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT2G01735 386 / 6e-134 RIE1 RING-finger protein for embryogenesis (.1) AT3G61180 267 / 5e-87 RING/U-box superfamily protein (.1) AT4G11680 248 / 2e-79 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G12760 241 / 1e-77 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) AT1G63170 240 / 1e-76 Zinc finger, C3HC4 type (RING finger) family protein (.1) AT1G80400 100 / 3e-23 RING/U-box superfamily protein (.1) AT5G55970 99 / 3e-23 RING/U-box superfamily protein (.1.2) AT4G26580 97 / 9e-23 RING/U-box superfamily protein (.1.2) AT4G32600 92 / 3e-20 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G134900 [exp] 500 / 5e-179 AT1G68070 392 / 2e-136 Zinc finger, C3HC4 type (RING finger) family protein (.1) Potri.003G123300 [exp] 242 / 6e-77 AT1G12760 400 / 7e-138 Zinc finger, C3HC4 type (RING finger) family protein (.1), Zinc finger, C3HC4 type (RING finger) family protein (.2) Potri.002G155200 [exp] 221 / 5e-69 AT3G61180 366 / 3e-125 RING/U-box superfamily protein (.1) Potri.014G075000 [exp] 220 / 1e-68 AT3G61180 315 / 1e-105 RING/U-box superfamily protein (.1) Potri.006G247000 [exp] 107 / 6e-26 AT4G32600 498 / 1e-175 RING/U-box superfamily protein (.1) Potri.001G371200 [exp] 100 / 1e-23 AT5G55970 424 / 3e-149 RING/U-box superfamily protein (.1.2) Potri.018G034400 [exp] 100 / 2e-23 AT4G32600 464 / 7e-162 RING/U-box superfamily protein (.1) Potri.011G094800 [exp] 99 / 3e-23 AT5G55970 412 / 1e-144 RING/U-box superfamily protein (.1.2) Potri.001G091700 [exp] 68 / 2e-12 AT5G53110 223 / 1e-69 RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034587 [exp] 411 / 5e-141 AT1G68070 489 / 6e-172 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10021801 [exp] 397 / 2e-137 AT1G68070 478 / 1e-169 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10041359 [exp] 229 / 4e-72 AT3G61180 400 / 6e-139 RING/U-box superfamily protein (.1) Lus10036569 [exp] 217 / 1e-67 AT3G61180 387 / 1e-133 RING/U-box superfamily protein (.1) Lus10006313 [exp] 202 / 1e-61 AT4G11680 456 / 8e-161 Zinc finger, C3HC4 type (RING finger) family protein (.1) Lus10029582 [exp] 164 / 7e-48 AT3G61180 315 / 3e-106 RING/U-box superfamily protein (.1) Lus10011475 [exp] 107 / 6e-26 AT1G80400 459 / 9e-161 RING/U-box superfamily protein (.1) Lus10008106 [exp] 105 / 3e-25 AT4G32600 410 / 1e-141 RING/U-box superfamily protein (.1) Lus10013144 [exp] 98 / 1e-22 AT4G32600 477 / 2e-167 RING/U-box superfamily protein (.1) Lus10022567 [exp] 89 / 1e-19 AT5G55970 418 / 1e-146 RING/U-box superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [poplar] [flax] RING PF13639 [poplar] [flax] zf-RING_2 Ring finger domain
Representative CDS sequence Show only first row Show all	>Potri.010G106300.1 pacid=42799033 polypeptide=Potri.010G106300.1.p locus=Potri.010G106300 ID=Potri.010G106300.1.v4.1 annot-version=v4.1 ATGTCATCCGAAAATGATTCCCACGCGCCACTCCTCCGCCCTCGACAAGACTCTCCGAACTCCCCAACCGCCAGCCAAACCACCCTAGCCGTCCTCCTCG GCCGAGCCACTGGCCGCCGCGGCCCGTCCATGCTGGTAAGAGAAACAGCAGCTCGTGAGCTGGATGAGAGACGCGCTGACTTGGGGTACTCGAAGCCGGT GGTGGCATTAGACATTCTGTGGAACGCAGCGTTCGTGGTGGTTTCGGTAACGATGCTGGTGGTGACGGCAAAGGAGAGGCCGAACACACCGATAAGGCTG TGGATCTGTGGGTATAGCTTGCAGTGTTTGGTGCATGTCATTTTGGTGTGGTTGGAGTATAGGAGAAGGAACACGAGGAGAGGGAGAGATGTAGAGAGCG AACAACAGTCAATTGAGGGAGAAAATGTTGCTGAGAGTGAAGACGAGGATGGCGATGAACATGATAGAGCAACTCCTCCTAGATCAAGTTTCACTAAAAG ATGTGAATCGGTGAATACCATGGTGTCATTTCTCTGGTGGATAGTTGGCTTTTATTGGGTAGTCTCTGGTGGCGATGCCCTTTTGCAAAATGCTCCTCGT TTGTACTGGCTGGCTGTGGTTTTTCTCGCATTTGATGTGTTCTTTGCGATCTTTTGTGTTGTTTTGGCATGTTTGATTGGGATCGCTCTCTGTTGCTGCT TGCCATGCATTATCGCAATTCTTTATGCTGTTGCAGGGCAGGAAGGTGCATCAGAAGCAGATCTCAGTATTCTGCCAAAATACAAATACCTCGTAATGGG TAATGAGGAAAAAAGGCCCAGAGTTGGGGCAGGGAAAATGGTTCCTGTGGAAACAAGCAGTGGGTACTTGTCAACTGAGCGTGTACTTTTACCTGAGGAT GCAGAATGCTGTATCTGTCTTAGCCCATATGAGGATGGAGCAGAACTCCATGCACTCCCTTGCAACCATCATTTCCATGCAATGTGCATTGTGAAATGGC TTAAGATGAATGCAACATGTCCTCTCTGCAAGTACAACATTCTCAAGGGAAATGAACAGGTATGA
AA sequence Show only first row Show all	>Potri.010G106300.1 pacid=42799033 polypeptide=Potri.010G106300.1.p locus=Potri.010G106300 ID=Potri.010G106300.1.v4.1 annot-version=v4.1 MSSENDSHAPLLRPRQDSPNSPTASQTTLAVLLGRATGRRGPSMLVRETAARELDERRADLGYSKPVVALDILWNAAFVVVSVTMLVVTAKERPNTPIRL WICGYSLQCLVHVILVWLEYRRRNTRRGRDVESEQQSIEGENVAESEDEDGDEHDRATPPRSSFTKRCESVNTMVSFLWWIVGFYWVVSGGDALLQNAPR LYWLAVVFLAFDVFFAIFCVVLACLIGIALCCCLPCIIAILYAVAGQEGASEADLSILPKYKYLVMGNEEKRPRVGAGKMVPVETSSGYLSTERVLLPED AECCICLSPYEDGAELHALPCNHHFHAMCIVKWLKMNATCPLCKYNILKGNEQV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G68070			Zinc finger, C3HC4 type (RING ...		Potri.010G106300 [exp]	0	1
					Potri.010G223733 [exp]	5.56	0.8323
AT5G16390		CAC1-A, BCCP-1,...	BIOTIN CARBOXYL-CARRIER PROTEI...		Potri.017G092500 [exp]	6.32	0.7892
AT1G77590		LACS9	long chain acyl-CoA synthetase...		Potri.002G084100 [exp]	8.06	0.7853	Pt-LACS9.3
AT5G57630		CIPK21, SnRK3.4	SNF1-RELATED PROTEIN KINASE 3....		Potri.006G171400 [exp]	10.00	0.8272
AT4G18160		KCO6, ATTPK3, A...	Ca2+ activated outward rectify...		Potri.002G059200 [exp]	10.09	0.8133
AT3G59310			Eukaryotic protein of unknown ...		Potri.003G030800 [exp]	11.13	0.8093
AT1G34300			lectin protein kinase family p...		Potri.019G086300 [exp]	11.31	0.7959
AT2G37340		RSZ33, ATRSZ33,...	arginine/serine-rich zinc knuc...		Potri.016G081700 [exp]	14.49	0.7741
AT1G09850		XBCP3	xylem bark cysteine peptidase ...		Potri.004G057700 [exp]	16.61	0.8000
AT2G17410	ARID		ARID/BRIGHT DNA-binding domain...		Potri.001G456500 [exp]	17.88	0.7783

Compare expression of checked genes

Potri.010G106300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.