Plant FIBer expression Database

Potri.010G106400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G25145 391 / 5e-137 AtLpxC4 lipid X C4, UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (.1)
AT1G25054 391 / 5e-137 AtLpxC3 lipid X C3, UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (.1.2)
AT1G24793 391 / 5e-137 AtLpxC1 lipid X C1, UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (.1.2)
AT1G24880 392 / 1e-136 AtLpxC2 lipid X C2, UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (.1.2.3)
AT1G25210 391 / 2e-136 AtLpxC5 lipid X C5, UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10003708
[exp]
392 / 3e-136 AT1G24880 365 / 1e-125 lipid X C2, UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (.1.2.3)
Lus10001592
[exp]
360 / 5e-124 AT1G24880 339 / 8e-116 lipid X C2, UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (.1.2.3)
Lus10021282
[exp]
72 / 1e-14 AT1G25210 87 / 2e-20 lipid X C5, UDP-3-O-acyl N-acetylglycosamine deacetylase family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0329 S5 PF03331 LpxC UDP-3-O-acyl N-acetylglycosamine deacetylase
Representative CDS sequence
>Potri.010G106400.4 pacid=42799979 polypeptide=Potri.010G106400.4.p locus=Potri.010G106400 ID=Potri.010G106400.4.v4.1 annot-version=v4.1
ATGGCTATCTCCGGTGCACTCAACGCTCTAAAGTCATCCGAACTCGTCTCCTGGAAACCATGTGGCAGGGTTCAACAAACACTAAAGAGATGCGTGGAGG
CAAGTGGGACGACACTCCACTCAGGAAAATCTTCAACAGTAAGGCTATTGCCAGAGCTAGCAGGCAAAGGGCGCTACTTCTATTTCAACTCCAAATCAAT
TCCAGCATCCATCGATTACGCACAAGAATCGTCTCTTTGCACAACTCTCTCCAACGACGGTGTTAAAATTCGAACCGTCGAGCACTTGCTTTCCGCTCTC
GAGGCTATGAGTGTCGATAATTGCCGTATTGAAATTACCAATCTTGACTCTGATGATTCCGACTTGGATTCCGAGGTTCCTATATTGGATGGTTCGGCGA
GGGAATGGGTGGAGAGAATAGAAAAAGATGGTTTAGTGGCAGCCAAAGATGAGTGTGGGAATGACTGTGAGAAACTGGCTCCCTATTTGAATGAGCCCAT
CCATGTATCGAAGAATGATTCGTTTGTGGCAGCGTTTCCATCACCGAAAGTTCGAGTTAGTTATGGGATTGATTTTCCTCAGGTTGCCATTGGCTCCCAG
TGGTTTTCCTTAGCTCCTCTGGAGGATTCTCTTTATGCCAGAGAAATAGCTCCATCAAGGACCTTTTGCATATATGAGGAGGTGGAGTATATGCGCAATG
CAGGACTTATTAAAGGGGGCTCACTAGACAATGCCATTGTTTGTAGTGCCAGCAAAGGTTGGTTGAATCCACCACTGCGTTTCTCTGATGAACCATGTCG
TCACAAGATCTTGGATCTTGTTGGTGACCTTTCCCTGTTTGCACGGTTTGGTAATCAAGGACTCCCAGTGGCACACATAGTTGTTTACAAGGGCGGCCAC
GCACTTCATACCAATTTTGGACGCCATCTCAACGATTCATTTAAGAGCTGA
AA sequence
>Potri.010G106400.4 pacid=42799979 polypeptide=Potri.010G106400.4.p locus=Potri.010G106400 ID=Potri.010G106400.4.v4.1 annot-version=v4.1
MAISGALNALKSSELVSWKPCGRVQQTLKRCVEASGTTLHSGKSSTVRLLPELAGKGRYFYFNSKSIPASIDYAQESSLCTTLSNDGVKIRTVEHLLSAL
EAMSVDNCRIEITNLDSDDSDLDSEVPILDGSAREWVERIEKDGLVAAKDECGNDCEKLAPYLNEPIHVSKNDSFVAAFPSPKVRVSYGIDFPQVAIGSQ
WFSLAPLEDSLYAREIAPSRTFCIYEEVEYMRNAGLIKGGSLDNAIVCSASKGWLNPPLRFSDEPCRHKILDLVGDLSLFARFGNQGLPVAHIVVYKGGH
ALHTNFGRHLNDSFKS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G25145 AtLpxC4 lipid X C4, UDP-3-O-acyl N-ace... Potri.010G106400
[exp]
0 1
Potri.014G015400
[exp]
6.32 0.8745
AT1G61010 CPSF73-I cleavage and polyadenylation s... Potri.017G076300
[exp]
9.48 0.8410
AT3G52120 SWAP (Suppressor-of-White-APri... Potri.009G064600
[exp]
10.95 0.8899
AT4G24810 Protein kinase superfamily pro... Potri.012G093600
[exp]
12.48 0.8241
AT4G16710 glycosyltransferase family pro... Potri.013G025600
[exp]
12.72 0.8743
AT2G40770 zinc ion binding;DNA binding;h... Potri.019G060300
[exp]
13.49 0.8825
Potri.004G188432
[exp]
15.09 0.8837
AT2G40770 zinc ion binding;DNA binding;h... Potri.019G060126
[exp]
18.97 0.8664
AT4G24740 AME1, AFC2 FUS3-complementing gene 2 (.1.... Potri.010G049100
[exp]
22.49 0.8604
AT3G58170 ATBET11, ATBS14... ARABIDOPSIS THALIANA BET1P/SFT... Potri.002G041500
[exp]
25.03 0.8484 Pt-BET11.2

Potri.010G106400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.