Plant FIBer expression Database

Potri.010G106700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G01690 1076 / 0 ARM repeat superfamily protein (.1.2)
AT4G27640 46 / 0.0001 ARM repeat superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G134600
[exp]
1245 / 0 AT2G01690 1070 / 0.0 ARM repeat superfamily protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034578
[exp]
1179 / 0 AT2G01690 1164 / 0.0 ARM repeat superfamily protein (.1.2)
Lus10021813
[exp]
1136 / 0 AT2G01690 1112 / 0.0 ARM repeat superfamily protein (.1.2)
Lus10001587
[exp]
1088 / 0 AT2G01690 1096 / 0.0 ARM repeat superfamily protein (.1.2)
Lus10003702
[exp]
1068 / 0 AT2G01690 1093 / 0.0 ARM repeat superfamily protein (.1.2)
Lus10003679
[exp]
619 / 0 AT2G01690 614 / 0.0 ARM repeat superfamily protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF02985 HEAT HEAT repeat
CL0020 PF11916 Vac14_Fig4_bd Vacuolar protein 14 C-terminal Fig4p binding
Representative CDS sequence
>Potri.010G106700.1 pacid=42797182 polypeptide=Potri.010G106700.1.p locus=Potri.010G106700 ID=Potri.010G106700.1.v4.1 annot-version=v4.1
ATGGCCGACGCCGTGATTCCTGCCGCCGTATTGCGTAATCTCTCTGACAAGCTCTATGAGAAGCGAAAAAACGCGGCTCTCGAGATTGAGGGGATAGTGA
AGTCGCTGGCAGCCGCCGGGGATCACGAGAAGATATCGGCGGTCATCAATTTGTTGACCACGGAATTCATCTGCTCTCCCCAAGCGCACCACCGCAAGGG
AGGATTGATAGGACTAGCAGCTGCAACAGTAGGGTTGACTACAGAAGCAGCTCAACATCTCGAGCAAATTGTGAAACCCGTACTTGGTGCTTTTGGTGAC
CAAGATAGCAGAGTTCGTTATTATGCTTGTGAAGCTCTATATAACATTGCCAAGGTGGTTAGGGGAGATTTTATTATTTTCTTTAATAAAATTTTTGATG
CCTTGTGTAAACTTTCGGCAGACTCGGATGCCAATGTACAGAGTGCTGCTCATCTTTTGGATCGGCTTGTAAAGGACATTGTTACTGCAAGTGATCAATT
CAGCATTGAAGAATTTATACCGTTGCTGAGAGAACGTATGAATGTCCTAAATCCCTACGTCCGACAGTTTTTGGTGGGATGGATCACTGTTTTGGACAGT
GTTCCAGAAATAGATATGCTGGGTTTTCTTCCTGATTTTCTTGATGGTTTGTTCAATATGTTGAGCGATTCTAGCCATGAAATACGACAGCAAGCTGATT
CTGCCCTTTCAGAGTTTCTTCAAGAGATTAAGAACTCCCCATCTGTAGATTATGGTCGCATGGCTGAAATACTGGTTCAGAGGGCAGCTTCTCCAGATGA
ATTTACTCGCTTAACAGCTATCACATGGATAAATGAGTTTGTGAAACTTGGTGGTGACCAACTTGTTCCCTATTATGCTGATATTTTGGGAGCCATTTTG
CCTTGCATATCTGACAAAGAAGAGAAAATTAGAGTGGTTGCTCGTGAAACCAATGAAGAGCTTCGTGCAATCAGGGCTGATCCTACTGCAGGATTTGATG
TTAGAGCAATTCTCTTCATTGCAAAGAGGCAATTATCGACTGAGTGGGAGGCTACTCGAATTGAAGCATTGCACTGGATATCAACACTTTTGAACAGACA
TCGCTCTGAGGTCTTGTCTTTTTTAAATAAAATATTTGATACCCTTCTCGAAGCACTGTCAGATCCATCTGATGAGGTGGTACTCCTTGTTCTTGAGGTT
CATGCATGCATAGCGAAAGATCTGCAACACTTTCACCAACTTCTTGTTTTCTTGGTGCATAATTTCCGCATCAATCACTCTCTTCTGGAGAAGCGCGGTA
CTTTGATAATCCGGCGACTCTGTGTTCTTTTAGATGCTGAAAGGGTCTATCGTGAACTTTCTACAATATTAGAGGGAGAAGCTGACCTGGATTTTGCATC
TATCATGGTTCAGGCTTTGAATTTGATTTTACTCACATCCTCTGAATTAGCTGAGCTTCGATATCTTTTAAAACAATCTCTGGTGAATTCTGCTGGGAAA
GATTTATTTGTTTCTTTGTATGCTTCGTGGTGCCATTCACCCGAGGCAATTATAAGCCTTTGTTTATTAGCACAGACTTACCAGCATGCCAGTACTGTGA
TTCAGTCGCTGGTAGAGGAAGATATTAATGTCAGGTTCTTGTTACAGCTGGATAAATTGATTCGTTTGCTGGAAACTCCCATCTTTGCTTACCTTAGATT
GCAGCTTCTTGAACCTGGAAGATATACATGGTTGTTAAAAGCTTTAAATGGTCTTCTGATGCTGCTCCCCCAGCAAAGCGCAGCTTTTAAGATACTGCGA
ACTCGTTTAAAAACTGTACCTTCATATTCCTTCAGTGACGATCAAGTTGAGCGAACATTTTCAGGGAACACATACTCTCAGATCCTACATCACATTCCAA
GTGGATCACAAATTTCCGAGGATGGTGATGTAAACCAGGATGTAGGGACTTCTGATTCGCATAATGGAATTAATTTCACTACAAGGCTGCATCAGTTTGA
GCAAAAGCAAAAACAACATCGGGTGCTTGCAAAAGCGCAGGCCAAGTCTCGCAAAATCTCCACATCATCATCAAAGGATGTACAAAGATTAGAGGAATCC
CAGCACCAACCTCCTTTGGATAATAGTGGGGCTCTTTCAAGATCATCTAGGAAAGGCCCGGGGCAATTACAACTCTGA
AA sequence
>Potri.010G106700.1 pacid=42797182 polypeptide=Potri.010G106700.1.p locus=Potri.010G106700 ID=Potri.010G106700.1.v4.1 annot-version=v4.1
MADAVIPAAVLRNLSDKLYEKRKNAALEIEGIVKSLAAAGDHEKISAVINLLTTEFICSPQAHHRKGGLIGLAAATVGLTTEAAQHLEQIVKPVLGAFGD
QDSRVRYYACEALYNIAKVVRGDFIIFFNKIFDALCKLSADSDANVQSAAHLLDRLVKDIVTASDQFSIEEFIPLLRERMNVLNPYVRQFLVGWITVLDS
VPEIDMLGFLPDFLDGLFNMLSDSSHEIRQQADSALSEFLQEIKNSPSVDYGRMAEILVQRAASPDEFTRLTAITWINEFVKLGGDQLVPYYADILGAIL
PCISDKEEKIRVVARETNEELRAIRADPTAGFDVRAILFIAKRQLSTEWEATRIEALHWISTLLNRHRSEVLSFLNKIFDTLLEALSDPSDEVVLLVLEV
HACIAKDLQHFHQLLVFLVHNFRINHSLLEKRGTLIIRRLCVLLDAERVYRELSTILEGEADLDFASIMVQALNLILLTSSELAELRYLLKQSLVNSAGK
DLFVSLYASWCHSPEAIISLCLLAQTYQHASTVIQSLVEEDINVRFLLQLDKLIRLLETPIFAYLRLQLLEPGRYTWLLKALNGLLMLLPQQSAAFKILR
TRLKTVPSYSFSDDQVERTFSGNTYSQILHHIPSGSQISEDGDVNQDVGTSDSHNGINFTTRLHQFEQKQKQHRVLAKAQAKSRKISTSSSKDVQRLEES
QHQPPLDNSGALSRSSRKGPGQLQL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G01690 ARM repeat superfamily protein... Potri.010G106700
[exp]
0 1
AT2G37150 RING/U-box superfamily protein... Potri.010G220700
[exp]
3.16 0.7219
AT1G27410 DNA repair metallo-beta-lactam... Potri.013G121101
[exp]
3.74 0.7199
AT1G21320 nucleotide binding;nucleic aci... Potri.006G224900
[exp]
4.69 0.7396
AT3G13410 unknown protein Potri.003G223601
[exp]
9.43 0.7433
AT3G50120 Plant protein of unknown funct... Potri.007G047700
[exp]
10.19 0.7032
AT2G43980 ATITPK4 "inositol 1,3,4-trisphosphate ... Potri.007G144701
[exp]
10.67 0.7207
AT3G50860 Clathrin adaptor complex small... Potri.005G122900
[exp]
14.69 0.7373
AT5G04040 SDP1 SUGAR-DEPENDENT1, Patatin-like... Potri.016G041000
[exp]
15.19 0.6958
AT1G66120 AMP-dependent synthetase and l... Potri.006G036200
[exp]
22.22 0.6718
AT2G42410 C2H2ZnF ATZFP11, ZFP11 zinc finger protein 11 (.1) Potri.002G041700
[exp]
23.23 0.7017

Potri.010G106700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.