Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01680 778 / 0 Ankyrin repeat family protein (.1) AT2G31820 394 / 2e-130 Ankyrin repeat family protein (.1) AT1G07710 389 / 5e-130 Ankyrin repeat family protein (.1) AT3G12360 389 / 4e-129 ITN1 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) AT5G60070 381 / 1e-126 ankyrin repeat family protein (.1) AT3G09550 375 / 2e-123 Ankyrin repeat family protein (.1) AT1G05640 371 / 7e-122 Ankyrin repeat family protein (.1) AT5G02620 365 / 7e-121 ATANK1, ANK1 ankyrin-like1 (.1) AT5G54710 145 / 2e-37 Ankyrin repeat family protein (.1) AT1G34050 138 / 5e-35 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G134500 [exp] 1011 / 0 AT2G01680 750 / 0.0 Ankyrin repeat family protein (.1) Potri.007G099600 [exp] 406 / 2e-136 AT1G07710 745 / 0.0 Ankyrin repeat family protein (.1) Potri.017G006800 [exp] 404 / 8e-135 AT2G31820 868 / 0.0 Ankyrin repeat family protein (.1) Potri.007G145200 [exp] 397 / 1e-131 AT2G31820 751 / 0.0 Ankyrin repeat family protein (.1) Potri.010G212700 [exp] 391 / 4e-130 AT3G12360 858 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.008G048400 [exp] 387 / 1e-128 AT3G12360 862 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.005G069300 [exp] 385 / 2e-128 AT1G07710 695 / 0.0 Ankyrin repeat family protein (.1) Potri.006G214500 [exp] 382 / 2e-126 AT3G12360 742 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Potri.006G214600 [exp] 377 / 2e-125 AT1G07710 565 / 0.0 Ankyrin repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021814 [exp] 870 / 0 AT2G01680 771 / 0.0 Ankyrin repeat family protein (.1) Lus10034579 [exp] 866 / 0 AT2G01680 768 / 0.0 Ankyrin repeat family protein (.1) Lus10015224 [exp] 415 / 7e-140 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10005432 [exp] 414 / 2e-139 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1) Lus10008329 [exp] 398 / 4e-132 AT2G31820 854 / 0.0 Ankyrin repeat family protein (.1) Lus10003308 [exp] 394 / 3e-131 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10015037 [exp] 392 / 6e-130 AT3G09550 849 / 0.0 Ankyrin repeat family protein (.1) Lus10023460 [exp] 373 / 2e-123 AT3G12360 929 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10003986 [exp] 370 / 1e-121 AT3G09550 831 / 0.0 Ankyrin repeat family protein (.1) Lus10024440 [exp] 341 / 6e-111 AT1G07710 618 / 0.0 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [poplar] [flax] Ank PF12796 [poplar] [flax] Ank_2 Ankyrin repeats (3 copies) CL0465 [poplar] [flax] PF13962 [poplar] [flax] PGG Domain of unknown function
Representative CDS sequence Show only first row Show all	>Potri.010G106800.1 pacid=42797817 polypeptide=Potri.010G106800.1.p locus=Potri.010G106800 ID=Potri.010G106800.1.v4.1 annot-version=v4.1 ATGATGATGATGGAGCCATCAAAGTCATCACTACGCTTCATAGCCCACCAGGCATTCTTCTCAGCCGTCCGATCGGGCGACCTTGATTCTTTGAGACAGA TAGTGGGGGATCAGCCATCCGATGTTTCCGATCTAATGTCCTTGCAGACTGATGCAGGAGAGACTGCTTTGTATATAGCCGCTGATAATAATTTGGAAGA GATTTTTAGTTATTTGATAAAGCGGTGTGATCTTGAAACTGTTAAGATCAGGTCGAAGTCTGACTTGGATGCTTTCCATCTTGCTGCTAAGAAGGGTCAC TTGGGCATTGTGAAGGAACTTTTGGCCATGTGGCCTGAGCTTTGCAAGTTATGCGACTCCTCCAATACTAGCCCCCTTTATTCAGCTGCTGTTAAAAATC ACTTGGATGTGGTGAATGCCATATTGGATGCTGATGTCAGTTCAATGAGGATAGTGCGTAAAAATGGGAAAACTGCTTTGCACACGGCTGCGAGGTATGG TCTTCTTGATATAGTGAAAGTTCTTATAGCCCGTGATTCTGGAATTGTCTGCATCAAAGATAAGAAAGGCCAAACTGCACTTCACATGGCTGTAAAGGGT CAGAGTACTTCTGTCGTTGAGGAGATATTACTTGCTGATCACTCAATACTAAATGAGCGTGACAAGAAGGGTAACACGGCAGTGCATATAGCCACAAGGA AATCTCGTCCCCAGATAATATTCCTTTTGCTGAGCTATACATCTATTAATGTCAACATCATCAATAATGAGCGTGAAACTGCGATGGATTTGGCTGATAA ACTCCAATATGGAGAATCTGCTTTGGAAATCAAGGAAGCTCTCATAGAGGCTGGTGCCAAGCATGCTAGGCATGTTGGTCAAATGGATGAAGCAATGGAA CTTAAGAGGACAGTTAGTGATATCAAGCATGAGGTGCATTCACAACTTATACAAAATGAAAAAACCAACCGAAGAGTTTCTGGCATTGCAAAGGAACTAA GGAAACTCCATAGAGAAGCTGTCCAGAATACAACCAACTCTGTCACTGTTGTTGCTGTTCTTTTTGCCTCGATTGCTTTCTTGGCTATCTTCAACTTGCC TGGGCAATATATACAGGATGGAGCTGAAACAGGGAAAGCTAATATAGCTGACAGTGTTGGTTTCCAAGTTTTCTGCCTCTTAAATGCAACATCTCTCTTT ATATCTTTAGCTGTTGTCGTGGTTCAGATCACTTTGGTGGCCTGGGACACCCAGGCTCAGAAACAGGTAGTCTCTGTAGTTAACAAGCTGATGTGGGCTG CATGTGCTTGCACTTGTGGTGCATTTCTATCTATAGCATTTGTGGTTGTGGGAAAGAAAAGTTCGTGGATGGCTATAACCATAACCTTAACAGGAGCACC GATTCTTGTCGGGACACTCGCAAGCATGTGCTACTTTGTTTTCCGACAGCATTTTGGATTTTTCCGGGACTCCCAGAGGCGCATAAAAAGGGCAAGTGGA AGCAAGTCGTTTTCCTGGTCAGTGCACTCAACAAATATATCAGATCCTGATGAGTACAACTCTGATCTGGAGAAGATCTATGCTTTATAA
AA sequence Show only first row Show all	>Potri.010G106800.1 pacid=42797817 polypeptide=Potri.010G106800.1.p locus=Potri.010G106800 ID=Potri.010G106800.1.v4.1 annot-version=v4.1 MMMMEPSKSSLRFIAHQAFFSAVRSGDLDSLRQIVGDQPSDVSDLMSLQTDAGETALYIAADNNLEEIFSYLIKRCDLETVKIRSKSDLDAFHLAAKKGH LGIVKELLAMWPELCKLCDSSNTSPLYSAAVKNHLDVVNAILDADVSSMRIVRKNGKTALHTAARYGLLDIVKVLIARDSGIVCIKDKKGQTALHMAVKG QSTSVVEEILLADHSILNERDKKGNTAVHIATRKSRPQIIFLLLSYTSINVNIINNERETAMDLADKLQYGESALEIKEALIEAGAKHARHVGQMDEAME LKRTVSDIKHEVHSQLIQNEKTNRRVSGIAKELRKLHREAVQNTTNSVTVVAVLFASIAFLAIFNLPGQYIQDGAETGKANIADSVGFQVFCLLNATSLF ISLAVVVVQITLVAWDTQAQKQVVSVVNKLMWAACACTCGAFLSIAFVVVGKKSSWMAITITLTGAPILVGTLASMCYFVFRQHFGFFRDSQRRIKRASG SKSFSWSVHSTNISDPDEYNSDLEKIYAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01680			Ankyrin repeat family protein ...		Potri.010G106800 [exp]	0	1
AT5G60050			BTB/POZ domain-containing prot...		Potri.001G233900 [exp]	2.00	0.7141
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125050 [exp]	6.48	0.7393
AT1G72710		CKL2	casein kinase 1-like protein 2...		Potri.003G043500 [exp]	17.49	0.7122
AT5G03450			Transducin/WD40 repeat-like su...		Potri.006G122800 [exp]	39.76	0.6741
AT1G35460	bHLH	bHLH080	basic helix-loop-helix (bHLH) ...		Potri.019G079900 [exp]	42.24	0.7054
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Potri.010G145900 [exp]	48.46	0.6877
AT5G67360		ARA12	Subtilase family protein (.1)		Potri.014G018900 [exp]	69.64	0.6712
AT3G19860	bHLH	bHLH121	basic Helix-Loop-Helix 121, ba...		Potri.005G113400 [exp]	109.04	0.6476
AT1G13460			Protein phosphatase 2A regulat...		Potri.017G070100 [exp]	144.20	0.6242
AT3G10572		APEM9	ABERRANT PEROXISOME MORPHOLOGY...		Potri.006G078700 [exp]	155.45	0.6192

Compare expression of checked genes

Potri.010G106800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.