Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 506 / 2e-164 disease resistance family protein / LRR family protein (.1) AT4G04220 259 / 1e-73 AtRLP46 receptor like protein 46 (.1) AT4G13920 260 / 3e-73 AtRLP50 receptor like protein 50 (.1) AT2G15080 250 / 2e-69 AtRLP19 receptor like protein 19 (.1.2) AT2G32680 248 / 4e-69 AtRLP23 receptor like protein 23 (.1) AT3G05660 245 / 4e-68 AtRLP33 receptor like protein 33 (.1) AT3G25020 241 / 1e-66 AtRLP42 receptor like protein 42 (.1) AT1G74190 240 / 5e-66 AtRLP15 receptor like protein 15 (.1) AT5G44700 241 / 2e-65 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT3G11080 238 / 3e-65 AtRLP35 receptor like protein 35 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G107000 [exp] 1677 / 0 AT2G34930 504 / 1e-163 disease resistance family protein / LRR family protein (.1) Potri.001G262800 [exp] 565 / 0 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.015G025100 [exp] 514 / 3e-166 AT2G34930 361 / 3e-109 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 498 / 1e-160 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 497 / 2e-160 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 494 / 4e-159 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 487 / 1e-156 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.015G028600 [exp] 484 / 2e-155 AT2G34930 387 / 1e-119 disease resistance family protein / LRR family protein (.1) Potri.001G043800 [exp] 470 / 6e-151 AT2G34930 383 / 7e-119 disease resistance family protein / LRR family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024737 [exp] 535 / 2e-175 AT2G34930 920 / 0.0 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 509 / 4e-164 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 508 / 5e-164 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 508 / 1e-163 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 507 / 1e-163 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10006948 [exp] 498 / 1e-162 AT2G34930 637 / 0.0 disease resistance family protein / LRR family protein (.1) Lus10039531 [exp] 498 / 2e-160 AT2G34930 485 / 2e-156 disease resistance family protein / LRR family protein (.1) Lus10002743 [exp] 495 / 3e-159 AT2G34930 476 / 6e-153 disease resistance family protein / LRR family protein (.1) Lus10016326 [exp] 494 / 7e-159 AT2G34930 456 / 2e-145 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 491 / 1e-157 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.010G106900.1 pacid=42797390 polypeptide=Potri.010G106900.1.p locus=Potri.010G106900 ID=Potri.010G106900.1.v4.1 annot-version=v4.1 ATGGAAACGCTTGCTACTGTTTTTAATCTTGTGCTTCTTTTGATTGTGAATCTTGTATTCAATGGAATTGGAGCTGATTCGAACTTAAGCTGTATCAAGA GGGAGAGAGATGCACTTCTCAAGTTCAAGCAAGGCCTCACAGATGATTCAGGCCAATTGCTTTCTTGGATTGGAGAAGACTGTTGCACATGGAAGGGAGT AAGCTGTAGCAACAGAACTGGCCATGTTGTACAGCTTGATCTACGAAATCGGCAGGTTTCATTTGCAAACAAAACTACCTTGCGAGGTGAGATCAACCAT TCTCTACTTAACTTGACACGTCTCGATTATCTAGACCTGAGCCTCAACAATTTCCAAGGTGCTGAAATTCCAGCTTTTCTAGGTTCTCTGAAAAATCTTA AATACCTAAACCTTTCTCATGCATCTTTCAACGGACAGGTTTCCCACCATCTTGGAAATCTTTCAAACTTGCAGTACCTTGATCTTAGTTGGAACTATGG CTTGAAAGTTGATACACTCCAGTGGGCATCCACTCTTCCTTCTTTGAAACACTTGGACCTTTCAGGTTTGAAACTTACCAAGGCCATCGACTGGTTAGAG TCAGTAAACATGCTTCCTTCTCTAGTAGAACTGCACTTATCCTCTTGTTCCCTTCCTCACATTCCTCTCTTTTTGCAAACCAATTTTACATCTCTTACCG TTCTTGATCTCAACACCAACTACTTCAATTCCTCCTTCCCCCAATGGCTATTTAATTTTAGCAGAATTCAAACTCTTAATCTAAGGGAGAATGGTTTTAG AGGCTCCATGTCCAGTGACATAGGTAATTTAAATCTACTTGCAATCCTTGACCTTTCTCACAATGAACTAGAGGGTGAAATACCAAGAACCTTGAGGAAT CTATGCAATTTGCGTGAGCTTGACTTGTCTCTCAACAAATTCAGTGGTGAGATTTCTCAACCTTTTGGCAGTCCAACTAGCTGCTTGCAGAACAGTTTAC AGAGTTTGGTTCTTGAAACTAATCATCTCAGAGGTAGTCTTCCAGATAGTTTAGGAAGCTATAAGCATCTAGTCAACCTCAATCTTTATTCTAACGCCTT TTCAGGTCCAATCCCAGCATCAATTGGAAGACTATCAAGTTTGAAATTATTAGACCTCTCCCATAATTACCTGAATGGTAGTGTTCCGGAAAGCGTTGGG CAGCTTTTCAATCTTGAGTTTTTGAATATCCATAACAATTCATTGAGTGGCATAGTTTCTGAACGTCACTTTTCAAAGCTCACCTCCTTGACTACCTTGT ATTTGTACCTTAACTCACTAGTTCTTGATCTTCGTCCCACTTGGGTACCTCCTTTCCAAATTCGAGAGCTTGCATTGTTTTCTTGCAAAGTTGGACCCCA ATTTCCACAATGGCTCCAAACACAGAAAAATCTGTCAACATTAGATATGTCTAACACTAGCATTTCGGATAGAATTCCGGATTGGTTTGAAAGCATTTCC TCCAATATTGTATTATTGGACTTGTCTCTTAATCAAATTGGAAAAAACTTGCCGAAGCTGAGAAAATCTTTCGATGCTTCTTCCAGATTCATATACTTGT ATTCCAACAAGTTCGAGGGTCCTCTAACTCCTTTTCCTTCAGATGTGATTGAATTAGACGTCTCCAACAACTTTCTCCGAGGCCAAATCCCCCAAGATAT TGGCAACATGATGCCACGATTGACCCTGTTCCATCTATCCAGCAATTCCTTAAATGGGAACATCCCAGTTTCTTTATGCAAGATGGGGGGATTACGATTT CTTGATCTCTCAGAAAATCAGTTTTCAGGAGGAATTCCGAATTGCTGGAGCAAGTTGCAGCATCTACGCGTGATGGATCTGTCTAGTAACATTCTGGATG ATCATATTCCAAGTTCTCTGGGTTCTCTACAGCAACTTCGATCTTTACACCTGCGAAACAATAGTTTGCAGGGAAAAGTGCCTGCGTCGTTAGAGAAGCT AAAACACTTGCACATTCTTGATCTCAGTGAAAATGTGCTAAATGGTACTATTCCTCCATGGATAGGTGAAGGGCTATCTTCACTGTCAGTGCTTGATGTT CATTCCAATAGGTTTCAAGGTGAGATTCCTCAGGAACTTTGCCACCTCACTTCTCTTCGCATTTTGAGCTTGGCACACAATGAGATGACCGGAACTATTC CCTCCTGTTTTCACAACTTTACTGGAATGATTGCAAATGAGTTCTCAGTGGAAGAACAATGGCCATACGGTCCTACGATATTTGATGATATTTTTGGGTT TCAGTCTGTGGTATATGTGGAGAACCTTTGGGTTTATATGAAGGGAATGCAGCTGAAATACACTAAGACACTTCCGTTTCTCTTTTCCATTGATCTTTCA AGAAACAGGTTTGTTGGAGAGATTCCAAATCAGCTTATGAATCTGTTGGAGCTACGAAACCTGAATTTATCTAGAAACAATTTTAAGGGGCAAATTCCTT GGAAGATTGGAGATTTGAGACAGTTGCAATCGCTTGATTTGTCTAGAAATGAGATTTCTGGCTTAATTCCTACAAGCCTTTCTCAATTGAATTTCCTAAG TGCCTTGAACTTGTCATTCAACAAGTTATCTGGACGCATTCCATCAGGAAATCAGCTCCAAACTTTAGATGACAAATCCATCTACGCTGGGAACAGTGGA CTTTGCGGGTTTCCACTTGACGACTGCCAAGAAGTAGCACTGCCTCCTGATGAGGGAAGACCAGAAGATGAGTTCGAAATTCTTTGGTTTTATGGCGGTA TGGGAGTGGGTTTTATGACTGGATTCGTAGGAGTTTCCAGCACGCTATATTTCAAGGATTCCTGGAGGGATGAGTTATTTCGATTAGTTGACAAAATTTA CAACAAGTTCCGAGTGATGATTGTGGTAAGCAAAAACCATCTACCAAGAAAGATTTATGGAGACAGATTTGGAGGACATGCTTGA
AA sequence Show only first row Show all	>Potri.010G106900.1 pacid=42797390 polypeptide=Potri.010G106900.1.p locus=Potri.010G106900 ID=Potri.010G106900.1.v4.1 annot-version=v4.1 METLATVFNLVLLLIVNLVFNGIGADSNLSCIKRERDALLKFKQGLTDDSGQLLSWIGEDCCTWKGVSCSNRTGHVVQLDLRNRQVSFANKTTLRGEINH SLLNLTRLDYLDLSLNNFQGAEIPAFLGSLKNLKYLNLSHASFNGQVSHHLGNLSNLQYLDLSWNYGLKVDTLQWASTLPSLKHLDLSGLKLTKAIDWLE SVNMLPSLVELHLSSCSLPHIPLFLQTNFTSLTVLDLNTNYFNSSFPQWLFNFSRIQTLNLRENGFRGSMSSDIGNLNLLAILDLSHNELEGEIPRTLRN LCNLRELDLSLNKFSGEISQPFGSPTSCLQNSLQSLVLETNHLRGSLPDSLGSYKHLVNLNLYSNAFSGPIPASIGRLSSLKLLDLSHNYLNGSVPESVG QLFNLEFLNIHNNSLSGIVSERHFSKLTSLTTLYLYLNSLVLDLRPTWVPPFQIRELALFSCKVGPQFPQWLQTQKNLSTLDMSNTSISDRIPDWFESIS SNIVLLDLSLNQIGKNLPKLRKSFDASSRFIYLYSNKFEGPLTPFPSDVIELDVSNNFLRGQIPQDIGNMMPRLTLFHLSSNSLNGNIPVSLCKMGGLRF LDLSENQFSGGIPNCWSKLQHLRVMDLSSNILDDHIPSSLGSLQQLRSLHLRNNSLQGKVPASLEKLKHLHILDLSENVLNGTIPPWIGEGLSSLSVLDV HSNRFQGEIPQELCHLTSLRILSLAHNEMTGTIPSCFHNFTGMIANEFSVEEQWPYGPTIFDDIFGFQSVVYVENLWVYMKGMQLKYTKTLPFLFSIDLS RNRFVGEIPNQLMNLLELRNLNLSRNNFKGQIPWKIGDLRQLQSLDLSRNEISGLIPTSLSQLNFLSALNLSFNKLSGRIPSGNQLQTLDDKSIYAGNSG LCGFPLDDCQEVALPPDEGRPEDEFEILWFYGGMGVGFMTGFVGVSSTLYFKDSWRDELFRLVDKIYNKFRVMIVVSKNHLPRKIYGDRFGGHA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34930			disease resistance family prot...		Potri.010G106900 [exp]	0	1
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.011G121200 [exp]	1.41	0.9256
AT1G76880	Trihelix		Duplicated homeodomain-like su...		Potri.001G309100 [exp]	3.00	0.9075
AT1G58190		AtRLP9	receptor like protein 9 (.1.2)		Potri.001G063500 [exp]	3.46	0.9008
AT1G16670			Protein kinase superfamily pro...		Potri.011G112000 [exp]	4.12	0.8769
AT3G27150			Galactose oxidase/kelch repeat...		Potri.001G331500 [exp]	10.29	0.9112
AT2G34930			disease resistance family prot...		Potri.010G107000 [exp]	12.00	0.8498
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.011G165800 [exp]	16.52	0.8703
AT5G48380		BIR1	BAK1-interacting receptor-like...		Potri.010G177900 [exp]	16.73	0.8419
					Potri.017G027900 [exp]	17.54	0.8836
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024404 [exp]	18.33	0.8878

Compare expression of checked genes

Potri.010G106900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.