Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G34930 505 / 5e-164 disease resistance family protein / LRR family protein (.1) AT3G05660 264 / 1e-74 AtRLP33 receptor like protein 33 (.1) AT4G13920 259 / 5e-73 AtRLP50 receptor like protein 50 (.1) AT3G11010 252 / 2e-70 AtRLP34 receptor like protein 34 (.1) AT4G04220 251 / 2e-70 AtRLP46 receptor like protein 46 (.1) AT2G32680 246 / 3e-68 AtRLP23 receptor like protein 23 (.1) AT2G15080 246 / 6e-68 AtRLP19 receptor like protein 19 (.1.2) AT1G45616 243 / 5e-67 AtRLP6 receptor like protein 6 (.1) AT1G47890 236 / 2e-64 AtRLP7 receptor like protein 7 (.1) AT5G27060 232 / 2e-63 AtRLP53 receptor like protein 53 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G106900 [exp] 1664 / 0 AT2G34930 506 / 1e-164 disease resistance family protein / LRR family protein (.1) Potri.001G262800 [exp] 544 / 2e-177 AT2G34930 429 / 8e-135 disease resistance family protein / LRR family protein (.1) Potri.015G025100 [exp] 522 / 3e-169 AT2G34930 361 / 3e-109 disease resistance family protein / LRR family protein (.1) Potri.015G025200 [exp] 507 / 5e-164 AT2G34930 414 / 7e-130 disease resistance family protein / LRR family protein (.1) Potri.012G034600 [exp] 504 / 6e-163 AT2G34930 434 / 1e-137 disease resistance family protein / LRR family protein (.1) Potri.015G024600 [exp] 504 / 7e-163 AT2G34930 415 / 5e-130 disease resistance family protein / LRR family protein (.1) Potri.015G025800 [exp] 495 / 9e-160 AT2G34930 375 / 3e-115 disease resistance family protein / LRR family protein (.1) Potri.001G043800 [exp] 458 / 2e-146 AT2G34930 383 / 7e-119 disease resistance family protein / LRR family protein (.1) Potri.015G024800 [exp] 460 / 5e-145 AT2G34930 299 / 3e-86 disease resistance family protein / LRR family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024737 [exp] 525 / 2e-171 AT2G34930 920 / 0.0 disease resistance family protein / LRR family protein (.1) Lus10001035 [exp] 509 / 5e-164 AT2G34930 488 / 9e-157 disease resistance family protein / LRR family protein (.1) Lus10016339 [exp] 507 / 2e-163 AT2G34930 495 / 2e-160 disease resistance family protein / LRR family protein (.1) Lus10002755 [exp] 506 / 3e-163 AT2G34930 467 / 2e-149 disease resistance family protein / LRR family protein (.1) Lus10016340 [exp] 506 / 6e-163 AT2G34930 492 / 8e-159 disease resistance family protein / LRR family protein (.1) Lus10002743 [exp] 501 / 2e-161 AT2G34930 476 / 6e-153 disease resistance family protein / LRR family protein (.1) Lus10039531 [exp] 499 / 8e-161 AT2G34930 485 / 2e-156 disease resistance family protein / LRR family protein (.1) Lus10016326 [exp] 499 / 1e-160 AT2G34930 456 / 2e-145 disease resistance family protein / LRR family protein (.1) Lus10016341 [exp] 498 / 3e-160 AT2G34930 482 / 3e-155 disease resistance family protein / LRR family protein (.1) Lus10016342 [exp] 493 / 9e-159 AT2G34930 478 / 4e-154 disease resistance family protein / LRR family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.010G107000.2 pacid=42800176 polypeptide=Potri.010G107000.2.p locus=Potri.010G107000 ID=Potri.010G107000.2.v4.1 annot-version=v4.1 ATGGAAACGCTTGCTACTGTTTTTAAGCTTGTGCTTCTTTTGATTGTGAATCTTGTATTCAATGGAATTGGAGCCGATTCGAACTTAAGCTGTATCAAGA GGGAGAGAGAGGCGCTTCTCAAGTTCAAGCAAGGCCTCACAGATGATTCAGGCCAATTGCTTTCTTGGGTTGGAGAAGACTGTTGCACATGGAAGGGAGT AAGCTGTAGCCACAGAACTGGTCATGTTGTACAGCTTGAACTACGAAATCGGCAGGTTTCATTTGCAAACAAAACTACCTTGCGAGGTGAGATCAACCAT TCTCTACTTAACTTGACACGTCTCGATTATCTAGACCTGAGCCTCAACAATTTCCAAGGTGCTGAAATTCCAGCTTTTCTAGGTTCTCTGAAAAATCTTA AATACCTAAACCTTTCTCATGCATCTTTCAACGGACAGGTTTCCCACCATCTTGGAAATCTTTCAAACTTGCAGTACCTTGATCTTAGTTGGAACTATGG CTTGAAAGTTGATACACTCCAGTGGGCATCCACTCTTCCTTCTTTGAAACACTTGGACCTTTCAGGTTTGAAACTTACCAAGGCCATCGACTGGTTAGAG TCAGTAAACATGCTTCCTTCTCTAGTAGAACTGCACTTATCCTCTTGTTCCCTTCCTCACATTCCTCTCGTTTTGCAAACCAATTTTACATCTCTTACCG TTCTTGATCTCAACACCAACTACTTCAATTCCTCCATCCCCCAATGGCTATTTAATTTTAGCAGAATTCAAACTCTTAATCTAAGGGAGAATGGTTTTAG AGGCTCCATGTCCAGTGACATAGGTAATTTAAATCTACTTGCAGTCCTTGACCTTTCTCACAATGAACTAGAGGGTGAAATGCCAAGAACCTTGAGGAAT CTATGCAATTTGCGTGAGCTTGACTTGTCTAACAACAAATTCAGTGGTGAGATTTCTCAACCTTTTGGCAGTCCAACTAGCTGCTTGCAGAACAGTTTAC AGAGTTTGGTTCTTGAAACCAATAATCTCAGAGGTAGTCTTCCAGATAGTTTAGGAAGCTATAAGCATCTAGTCAACCTCAATCTTTATTCTAACGCCTT TTCAGGTCCAATCCCAGCATCAATTGGAAGACTATCAAGTTTGAAATTATTAGACCTCTCCCATAATTACCTGAATGGTAGTGTTCCGGAAAGCGTTGGG CAGCTTTTCAATCTTGAGATTTTGAATATCCATAACAATTCATTGAGTGGCATAGTTTCTGAACGTCACTTTTCAAAGCTCACCTCCTTGACTACCTTGT ATTTGTACACTACCTCACTAGTTCTTGATCTTCGTCCCACTTGGGTACCTCCTTTCCAAATTCGAAAGCTTTCATTGTTTTCTTGCAAAGTTGGACCCCA ATTTCCACAATGGCTCCAAACACAGAAAAATCTGTCAATATTAGAGATGTCTAACACTAGCATTTCGGATAGCATTCCGGATTGGTTTGAAAGCATTTCC ACCAATATTGTATTATTGGACTTGTCTCGTAATCAAATTGGAAAAAACTTGCCGCAGCTGAGAAAATCTTTTGATGCTTCTTCCAGATTCATATACTTGT ATTCCAACAAGTTCGAGGGTCCTCTAACTCCTTTTCCTTCAGATGTGATTGAATTAGACGTCTCCAACAACTTTCTCCGAGGCCAAATCCCCCAAGATAT TGGCAACATGATGATGCCACGATTGACCCTGTTGCATCTATCCACCAATTCCTTAAATGGGAACATCCCAGTTTCTTTATGCAAGATGGGGGGATTACGA TTTCTTGATCTCTCAGAAAATCAGTTTTCAGGAGGAATTCCGAATTGCTGGAGCAAGTTGCAGCATCTACGCGTGATGGATCTGTCTAGTAACATTCTGG ATGATCATATTCCAAGTTCTCTGGGTTCTCTACAGCAACTTCGATCTTTACACCTGCGAAACAATAGTTTGCAGGGAAAAGTGCCTGCGTCGTTAGAGAA GCTAAAACACTTGCACATTCTTGATCTCAGTGAAAATGTGCTAAATGGTACTATTCCTCCATGGATAGGTGAAGGGCTATCTTCACTGTCAGTGCTTGAT GTTCATTCCAATAGGTTTCAAGGTGAGATTCCTCAGGAACTTTGCCACCTCACTTCTCTTCGCATTTTGAGCTTGGCACACAATGAGATGACCGGAACTA TTCCCTCCTGTTTTCACAACTTTACTGGAATGATTGCAAATGAGTTCTCAGTGGAAGAACAATGGCCATACGGTCCTACGATATTTGATGATATTTTTGG GTTTCAGTCTGTGGTATATGTGGAGAACCTTTGGGTTTATATGAAGGGAATGCAGCTGAAATACACTAAGACACTTCCGTTTCTCTTTTCCATTGATCTT TCAAGAAACAGGTTTGTTGGAGAGATTCCAAATCAGCTTATGAATCTGTTGGAGCTACGAAACCTGAATTTATCTAGAAACAATTTTAAGGGGCAAATTC CTTGGAAGATTGGAGATTTGAGACAGTTGCAATCGCTTGATTTGTCTAGAAATGAGATTTCTGGCTTAATTCCTACAAGCCTTTCTCAATTGAATTTCCT AAGTGCCTTGAACTTGTCATTCAACAAGTTATCTGGACGCATTCCATCAGGAAATCAGCTCCAAACTTTAGATGACAAATCCATCTACGCTGGGAACAGT GGACTTTGCGGGTTTCCACTTGACGACTGCCAAGAAGTAGCACTGCCTCCTGATGAGGGAAGACCAGAAGATGAGTTCGAAATTCTTTGGTTTTATGGCG GTATGGGAGTGGGTTTTATGACTGGATTCGTAGGAGTTTCCAGCACGCTATATTTCAAGGATTCCTGGAGGGATGCGTTTTTTCGATTAGTTGACAAAAT TTACAACAAGTTCCGAGTGATGATTGTGGTAAGCAAAAACCATCTACCAAGAAAGATTTATGGAGACAGATTTGGAGGACATGCTTGA
AA sequence Show only first row Show all	>Potri.010G107000.2 pacid=42800176 polypeptide=Potri.010G107000.2.p locus=Potri.010G107000 ID=Potri.010G107000.2.v4.1 annot-version=v4.1 METLATVFKLVLLLIVNLVFNGIGADSNLSCIKREREALLKFKQGLTDDSGQLLSWVGEDCCTWKGVSCSHRTGHVVQLELRNRQVSFANKTTLRGEINH SLLNLTRLDYLDLSLNNFQGAEIPAFLGSLKNLKYLNLSHASFNGQVSHHLGNLSNLQYLDLSWNYGLKVDTLQWASTLPSLKHLDLSGLKLTKAIDWLE SVNMLPSLVELHLSSCSLPHIPLVLQTNFTSLTVLDLNTNYFNSSIPQWLFNFSRIQTLNLRENGFRGSMSSDIGNLNLLAVLDLSHNELEGEMPRTLRN LCNLRELDLSNNKFSGEISQPFGSPTSCLQNSLQSLVLETNNLRGSLPDSLGSYKHLVNLNLYSNAFSGPIPASIGRLSSLKLLDLSHNYLNGSVPESVG QLFNLEILNIHNNSLSGIVSERHFSKLTSLTTLYLYTTSLVLDLRPTWVPPFQIRKLSLFSCKVGPQFPQWLQTQKNLSILEMSNTSISDSIPDWFESIS TNIVLLDLSRNQIGKNLPQLRKSFDASSRFIYLYSNKFEGPLTPFPSDVIELDVSNNFLRGQIPQDIGNMMMPRLTLLHLSTNSLNGNIPVSLCKMGGLR FLDLSENQFSGGIPNCWSKLQHLRVMDLSSNILDDHIPSSLGSLQQLRSLHLRNNSLQGKVPASLEKLKHLHILDLSENVLNGTIPPWIGEGLSSLSVLD VHSNRFQGEIPQELCHLTSLRILSLAHNEMTGTIPSCFHNFTGMIANEFSVEEQWPYGPTIFDDIFGFQSVVYVENLWVYMKGMQLKYTKTLPFLFSIDL SRNRFVGEIPNQLMNLLELRNLNLSRNNFKGQIPWKIGDLRQLQSLDLSRNEISGLIPTSLSQLNFLSALNLSFNKLSGRIPSGNQLQTLDDKSIYAGNS GLCGFPLDDCQEVALPPDEGRPEDEFEILWFYGGMGVGFMTGFVGVSSTLYFKDSWRDAFFRLVDKIYNKFRVMIVVSKNHLPRKIYGDRFGGHA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G34930			disease resistance family prot...		Potri.010G107000 [exp]	0	1
AT3G51895		AST12, ATST1, S...	sulfate transporter 3;1 (.1)		Potri.005G213500 [exp]	4.47	0.8208	Pt-SULTR3.5
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Potri.012G016715 [exp]	5.09	0.8525
AT5G22510		INV-E, At-A/N-I...	Arabidopsis alkaline/neutral i...		Potri.008G024100 [exp]	9.74	0.8455
AT4G39640		GGT1	gamma-glutamyl transpeptidase ...		Potri.005G082800 [exp]	9.89	0.8125
AT2G34930			disease resistance family prot...		Potri.010G106900 [exp]	12.00	0.8498
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Potri.012G006300 [exp]	12.68	0.8240
AT4G30380		EXLB2	Barwin-related endoglucanase (...		Potri.018G098200 [exp]	14.45	0.8166
AT2G22240		ATIPS2, ATMIPS2	MYO-INOSITOL-1-PHOSTPATE SYNTH...		Potri.007G089000 [exp]	20.59	0.8485	Pt-MIPS.2
AT5G47070			Protein kinase superfamily pro...		Potri.003G085300 [exp]	22.51	0.8136
AT4G15480		UGT84A1	UDP-Glycosyltransferase superf...		Potri.009G095400 [exp]	24.49	0.8164

Compare expression of checked genes

Potri.010G107000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.