Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70650 448 / 9e-154 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) AT1G55040 238 / 6e-69 zinc finger (Ran-binding) family protein (.1) AT1G48570 223 / 1e-66 zinc finger (Ran-binding) family protein (.1) AT5G17790 129 / 3e-31 VAR3 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) AT1G53460 70 / 5e-13 unknown protein AT5G25490 41 / 0.0005 Ran BP2/NZF zinc finger-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G033000 [exp] 239 / 1e-69 AT1G55040 531 / 5e-177 zinc finger (Ran-binding) family protein (.1) Potri.015G038200 [exp] 230 / 2e-69 AT1G48570 335 / 4e-111 zinc finger (Ran-binding) family protein (.1) Potri.012G046500 [exp] 229 / 3e-67 AT1G48570 338 / 3e-110 zinc finger (Ran-binding) family protein (.1) Potri.013G022300 [exp] 219 / 1e-61 AT1G55040 543 / 1e-179 zinc finger (Ran-binding) family protein (.1) Potri.013G067200 [exp] 142 / 1e-35 AT5G17790 466 / 6e-152 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) Potri.001G376900 [exp] 61 / 6e-10 AT1G53460 254 / 3e-83 unknown protein Potri.018G029900 [exp] 46 / 1e-05 AT3G15680 176 / 4e-57 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.006G149900 [exp] 42 / 0.0002 AT2G26695 177 / 2e-58 Ran BP2/NZF zinc finger-like superfamily protein (.1) Potri.018G066900 [exp] 42 / 0.0004 AT2G26695 177 / 2e-57 Ran BP2/NZF zinc finger-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032790 [exp] 561 / 0 AT1G70650 428 / 2e-146 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10003580 [exp] 408 / 9e-140 AT1G70650 323 / 8e-108 Ran BP2/NZF zinc finger-like superfamily protein (.1.2) Lus10009049 [exp] 233 / 2e-70 AT1G48570 365 / 7e-123 zinc finger (Ran-binding) family protein (.1) Lus10009681 [exp] 209 / 1e-61 AT1G48570 334 / 3e-111 zinc finger (Ran-binding) family protein (.1) Lus10015180 [exp] 192 / 1e-52 AT1G55040 614 / 0.0 zinc finger (Ran-binding) family protein (.1) Lus10031502 [exp] 150 / 1e-38 AT1G55040 421 / 5e-137 zinc finger (Ran-binding) family protein (.1) Lus10013630 [exp] 122 / 9e-29 AT5G17790 338 / 4e-103 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) Lus10003872 [exp] 113 / 5e-26 AT5G17790 453 / 1e-148 VARIEGATED 3, zinc finger (Ran-binding) family protein (.1) Lus10019433 [exp] 50 / 1e-06 AT2G26695 198 / 2e-65 Ran BP2/NZF zinc finger-like superfamily protein (.1) Lus10043289 [exp] 48 / 5e-06 AT2G26695 198 / 8e-66 Ran BP2/NZF zinc finger-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00641 [poplar] [flax] zf-RanBP Zn-finger in Ran binding protein and others
Representative CDS sequence Show only first row Show all	>Potri.010G107400.1 pacid=42799192 polypeptide=Potri.010G107400.1.p locus=Potri.010G107400 ID=Potri.010G107400.1.v4.1 annot-version=v4.1 ATGAATAAGCTCTTTCAATTTCGCCATGAATATCTTTCTTTTTCCATTAAAAGCTGTTATAAAAACCCTAAGTTTCTTCTACCCATTTCACATTTGCACA GCTTCTCCAAAACCCAGGATCTAGACTTCATTTTCGAGGAGGTAGAAGTCCTCGATTCTTCAAAACCCACAAACCAAAAAAACCAACTTCCATCAAAAAC TAACGAACCGTCCGATGACAGCCACCCCAGTGAACGAATGGAATCGACGGTTCAGATTTCCCATCCCTGGCCTGAATGGGTGGATTTGATGGAATTGCTG TTAAAGAGAGGGTACTTTGAAGCTGGTGGAAACCCAGTTGGAAACAAGGAACTGGGTTCCAAGGACGCGAGTTGTATTAGAACCGCGTGCCTTAATTTTG CACGGGATCGGTTTGGACTTATAAGGTACTTCTCGAGGAAAGATATTGGGGTTATTGCAGGATGCGGCTGCCCTAGCATAGATAGAAAAGTTGTGAACTC TGGGAAACGTTTAAGAGCACATGTGGGCATCAACGAAGGACATGTTTGCAGCTCCTGCAACTTAAGGGGAGACTGTGAAAGGGCATATGTCAAAGCACGA GAAGATGAAGGTGGGCGAACTGTGGATGTCATGCGTATTCTACTGACATATGGGCTCGATTATGTTTCCGGTACAGTGGAGAATAAGCCATGTCAAAAGA ACAAAATGGTTAAAGAATCAGTGAGAAGGCTGCTGAAGGAGTTGGTGGGCCTTAGCAATGACGAACTTGTCTCTGACCTCCCTAATGGCAAACCCTTGAA AAGGGGTCTCCCTTTACCAAATAATTCGACTACACAAGATAAAGGCCCAATAAATGTTCCAATGAAGCCTGGCGATTGGCTTTGCCCTGAATGCAACTTC CTCAATTTTGCCAGAAATGTTAGATGTCTGCGGTGTGATGGATTGCACCATGAAAGGCTAAAGCATCTATGCGAGGATCAGGATCATCTTCCATTAAAGA AAGGAGACTGGATTTGTGCAATATGTAATTTCTTGAACTTTGCCAAGAATACAAGATGTCTGCAATGCAAAGAGAAGCCTCCAAAGCGGCACCTTAATCC TGGGGAGTGGGAATGTGAATCGTGCAACTACATCAATTTCAGAAGAAACATGGTATGCTTGAAATGTGATCATAGAAGGCCAAAGGCATCAAATTGTTTA AAGTCATCTACTGAGCTTGAACATGGCAAGGGAGGTAATCCTGAGCAGAGTAGATTGAAGTTTCTTCACAGTGGAAATGAAGCCGCTGATCATAATTTTG TAGGAGTGCATGGAACACATCACAACAGAGGTGCAGACGTGTGGAGATTTGTGGAAGAAGAAAGAGAAGATAATCATTCAATTTCATCGAATGAGGGTGT GAGATTTGTAGATTTCCCTATTGCGGGAGGAAAGAGCAGTTTGTCTCAAAATGCCCAAAAAAGAGAGAGATGGAAGCTAGAAATGTTGGAGAGGAGCAAA GGTGGTGTGCATGTGGAAGAAGATGAAAAGGAATTTGAATATGCCAACACTCAAAGAAGATTCAAGTACCTTGAATCTACTGATGATGAAGATATGGCTG AATGGTTTGGACATGGAGGGAAAAAGGAAACATGA
AA sequence Show only first row Show all	>Potri.010G107400.1 pacid=42799192 polypeptide=Potri.010G107400.1.p locus=Potri.010G107400 ID=Potri.010G107400.1.v4.1 annot-version=v4.1 MNKLFQFRHEYLSFSIKSCYKNPKFLLPISHLHSFSKTQDLDFIFEEVEVLDSSKPTNQKNQLPSKTNEPSDDSHPSERMESTVQISHPWPEWVDLMELL LKRGYFEAGGNPVGNKELGSKDASCIRTACLNFARDRFGLIRYFSRKDIGVIAGCGCPSIDRKVVNSGKRLRAHVGINEGHVCSSCNLRGDCERAYVKAR EDEGGRTVDVMRILLTYGLDYVSGTVENKPCQKNKMVKESVRRLLKELVGLSNDELVSDLPNGKPLKRGLPLPNNSTTQDKGPINVPMKPGDWLCPECNF LNFARNVRCLRCDGLHHERLKHLCEDQDHLPLKKGDWICAICNFLNFAKNTRCLQCKEKPPKRHLNPGEWECESCNYINFRRNMVCLKCDHRRPKASNCL KSSTELEHGKGGNPEQSRLKFLHSGNEAADHNFVGVHGTHHNRGADVWRFVEEEREDNHSISSNEGVRFVDFPIAGGKSSLSQNAQKRERWKLEMLERSK GGVHVEEDEKEFEYANTQRRFKYLESTDDEDMAEWFGHGGKKET

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70650			Ran BP2/NZF zinc finger-like s...		Potri.010G107400 [exp]	0	1
AT4G03090			sequence-specific DNA binding;...		Potri.002G213400 [exp]	3.74	0.8294
AT4G19600		CYCT1;4	Cyclin family protein (.1)		Potri.008G150500 [exp]	4.24	0.8180
AT2G22720			SPT2 chromatin protein (.1.2.3...		Potri.005G148700 [exp]	9.16	0.7981
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G026000 [exp]	11.61	0.8290
AT1G45616		AtRLP6	receptor like protein 6 (.1)		Potri.012G024900 [exp]	12.44	0.8315
AT4G39370		UBP27	ubiquitin-specific protease 27...		Potri.007G077100 [exp]	12.96	0.7855	Pt-UBP27.1
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025001 [exp]	13.60	0.8219
AT1G14610		VALRS, TWN2	VALYL TRNA SYNTHETASE, TWIN 2,...		Potri.005G087850 [exp]	18.46	0.8040
AT4G02070		ATMSH6, MSH6-1	MUTS HOMOLOG 6-1, ARABIDOPSIS...		Potri.008G190950 [exp]	22.84	0.7850
AT3G19440			Pseudouridine synthase family ...		Potri.009G095700 [exp]	30.98	0.7723

Compare expression of checked genes

Potri.010G107400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.