Plant FIBer expression Database

Pt-CABP1.2 (Potri.010G107900) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-CABP1.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G70670 273 / 3e-94 AtCLO4 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1)
AT1G70680 261 / 2e-89 Caleosin-related family protein (.1)
AT1G23240 224 / 5e-75 Caleosin-related family protein (.1.2.3)
AT5G55240 186 / 3e-59 ATPXG2 ARABIDOPSIS THALIANA PEROXYGENASE 2 (.1)
AT2G33380 184 / 2e-58 AtCLO3, CLO-3, RD20 RESPONSIVE TO DESSICATION 20, Arabidopsis thaliana caleosin 3, Caleosin-related family protein (.1.2)
AT4G26740 178 / 3e-56 CLO1, ATPXG1, ATS1 CALEOSIN1, ARABIDOPSIS THALIANA PEROXYGENASE 1, seed gene 1 (.1)
AT5G29560 163 / 1e-50 caleosin-related family protein (.1)
AT1G23250 146 / 3e-44 Caleosin-related family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G133800
[exp]
382 / 3e-137 AT1G70670 272 / 4e-94 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1)
Potri.010G066600
[exp]
186 / 2e-59 AT4G26740 377 / 5e-134 CALEOSIN1, ARABIDOPSIS THALIANA PEROXYGENASE 1, seed gene 1 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034325
[exp]
244 / 1e-82 AT1G70670 197 / 3e-64 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1)
Lus10041446
[exp]
234 / 2e-79 AT1G70670 203 / 2e-67 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1)
Lus10014588
[exp]
212 / 1e-70 AT1G70670 197 / 6e-65 Arabidopsis thaliana caleosin 4, Caleosin-related family protein (.1)
Lus10023732
[exp]
190 / 5e-61 AT4G26740 360 / 3e-127 CALEOSIN1, ARABIDOPSIS THALIANA PEROXYGENASE 1, seed gene 1 (.1)
Lus10011775
[exp]
188 / 3e-60 AT4G26740 361 / 1e-127 CALEOSIN1, ARABIDOPSIS THALIANA PEROXYGENASE 1, seed gene 1 (.1)
Lus10032097
[exp]
43 / 0.0001 AT3G01650 514 / 0.0 RING domain ligase1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0220 EF_hand PF05042 Caleosin Caleosin related protein
Representative CDS sequence
>Potri.010G107900.2 pacid=42797337 polypeptide=Potri.010G107850.1.p locus=Potri.010G107900 ID=Potri.010G107900.2.v4.1 annot-version=v4.1
ATGAATTCCTCCACCTTATCATCAACCGATAAGCAACAAAATGGGAAATTTGTACCAAATGATCATAACGTACTGCAGAAGCATGTCTTCTTCTTTGATA
GGAATCAAGATGGCATTGTTTATCCCTGGGAGACGTTTCAAGGTTTTCGTTCAATTGGGTGTGGTATCTTGTTATCCACTGCCAGTGCCTTTCTGATCAA
TATCGCTCTCAGCCAGAAAACTCGACCTGGGAAGTTTCCTTCTCTTTTGTTCCCTATTGAGGTTAAGAACATCCAGCGAGCCAAGCATGGGAGTGATTCT
GGTGTATATGACAGTGAAGGAAGGTTTGTTCCTGCAAAATTTGAAGAAATCTTCAGCAAACATGCACGTTCACATCCAAATTCCTTGACATCAGACGAGC
TGATGGGAATGCTCAAGGCTAACAGAGAACCCAAGGACTTCAAAGGATGGGTTGCTTCCTACACAGAATGGAAGATCCTGTACACTCTTTGCAAGGATAA
GGATGGTTTGCTTCACAAGGATACTATTAGAGCTGTCTATGATGGAAGCTTATTTGAACGCATGGAGAAGGAAAGAGCATCACCAAAAAAGACAGCCGTT
GTGTAA
AA sequence
>Potri.010G107900.2 pacid=42797337 polypeptide=Potri.010G107850.1.p locus=Potri.010G107900 ID=Potri.010G107900.2.v4.1 annot-version=v4.1
MNSSTLSSTDKQQNGKFVPNDHNVLQKHVFFFDRNQDGIVYPWETFQGFRSIGCGILLSTASAFLINIALSQKTRPGKFPSLLFPIEVKNIQRAKHGSDS
GVYDSEGRFVPAKFEEIFSKHARSHPNSLTSDELMGMLKANREPKDFKGWVASYTEWKILYTLCKDKDGLLHKDTIRAVYDGSLFERMEKERASPKKTAV
V

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G70670 AtCLO4 Arabidopsis thaliana caleosin ... Potri.010G107900
[exp]
0 1 Pt-CABP1.2
AT2G42490 Copper amine oxidase family pr... Potri.010G045600
[exp]
5.09 0.7323
AT5G03960 IQD12 IQ-domain 12 (.1) Potri.006G046000
[exp]
7.07 0.7022
AT1G09890 Rhamnogalacturonate lyase fami... Potri.002G110200
[exp]
9.89 0.8365
AT4G14950 KMS1 Killing Me Slowly 1, SNARE ass... Potri.013G021700
[exp]
12.12 0.6606
AT2G31955 CNX2 cofactor of nitrate reductase ... Potri.001G230604
[exp]
15.49 0.7281
AT2G44260 Plant protein of unknown funct... Potri.001G232500
[exp]
15.65 0.7702
AT5G54130 Calcium-binding endonuclease/e... Potri.012G007600
[exp]
16.12 0.7926
AT5G62960 unknown protein Potri.012G082400
[exp]
20.17 0.7465
AT5G12950 Putative glycosyl hydrolase of... Potri.001G018200
[exp]
21.97 0.7633
AT3G15510 NAC ATNAC2, ANAC056... NAC-REGULATED SEED MORPHOLOGY ... Potri.001G404400
[exp]
31.11 0.7588 Pt-ATNAC2.2

Potri.010G107900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.