Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01630 708 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT1G66250 678 / 0 O-Glycosyl hydrolases family 17 protein (.1) AT1G11820 577 / 0 O-Glycosyl hydrolases family 17 protein (.1.2) AT3G13560 496 / 1e-172 O-Glycosyl hydrolases family 17 protein (.1.2.3) AT2G05790 350 / 6e-116 O-Glycosyl hydrolases family 17 protein (.1) AT4G26830 343 / 1e-113 O-Glycosyl hydrolases family 17 protein (.1) AT4G29360 341 / 9e-112 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G55180 337 / 4e-111 O-Glycosyl hydrolases family 17 protein (.1.2) AT5G56590 337 / 9e-111 O-Glycosyl hydrolases family 17 protein (.1) AT4G34480 319 / 1e-103 O-Glycosyl hydrolases family 17 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G133200 [exp] 873 / 0 AT2G01630 721 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.004G086400 [exp] 750 / 0 AT1G66250 741 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.017G130200 [exp] 745 / 0 AT1G66250 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.011G006100 [exp] 574 / 0 AT1G11820 805 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.004G010500 [exp] 566 / 0 AT1G11820 794 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Potri.003G218500 [exp] 510 / 1e-178 AT3G13560 594 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Potri.001G006500 [exp] 494 / 2e-172 AT3G13560 632 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Potri.018G068600 [exp] 347 / 2e-114 AT5G56590 685 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Potri.002G224600 [exp] 345 / 5e-114 AT2G05790 750 / 0.0 O-Glycosyl hydrolases family 17 protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013465 [exp] 791 / 0 AT2G01630 745 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10007929 [exp] 759 / 0 AT2G01630 730 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10034607 [exp] 729 / 0 AT2G01630 691 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10002295 [exp] 726 / 0 AT1G66250 753 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10004044 [exp] 721 / 0 AT1G66250 752 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10031456 [exp] 545 / 0 AT1G11820 796 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2) Lus10039179 [exp] 500 / 3e-174 AT3G13560 634 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Lus10013758 [exp] 463 / 4e-160 AT3G13560 595 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2.3) Lus10015151 [exp] 354 / 2e-117 AT2G05790 731 / 0.0 O-Glycosyl hydrolases family 17 protein (.1) Lus10032562 [exp] 338 / 1e-111 AT5G55180 642 / 0.0 O-Glycosyl hydrolases family 17 protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00332 [poplar] [flax] Glyco_hydro_17 Glycosyl hydrolases family 17 CL0058 [poplar] [flax] PF07983 [poplar] [flax] X8 X8 domain
Representative CDS sequence Show only first row Show all	>Potri.010G108500.1 pacid=42799015 polypeptide=Potri.010G108500.1.p locus=Potri.010G108500 ID=Potri.010G108500.1.v4.1 annot-version=v4.1 ATGGCTCTGCTGCTCCTGCTTTTCTTATTGATGGTGCCTGTTGTTTCTGCTGATGAAGATGCCTTCATTGGTGTGAATATTGGCACAGCACTCTCTGACA TGCCAAGTCCAACTCAGGTGGTAGCCCTTCTTAAGGCTCAGAACATTCGACATGTCAGGCTCTATGATGCAGACCGAGCCATGCTCCATGCACTTGCCAA CACAGGCATCCGTGTAACTGTTTCAGTTCCCAATGAGCAGCTCCTTGGCATTGGTCAATCGAATGCCACTGCAGCCAACTGGGTTGCTCGCAATGTAATA GCCCATGTCCCTGCCACCAACATCACAGCCATTGCAGTTGGATCTGAAATCCTTACTACACTCCCAAATGCTGCCCCTGTCCTGGTCTCTGCCCTGAAGT TTATCCATTCTGCCCTTGTTGCCTCCAATCTTGATGGCCAAATTAAAGTCTCTACCCCTCAGTCTTCTTCCATCATCCTTGACTCTTTCCCTCCTTCCCA AGCCTTCTTCAATCGCTCTTGGGATCCAGTCATGGTTCCCTTGCTTAAATTTTTGCAGTCCACAGGGTCATACTTTATGCTAAATGTATATCCATACTAT GACTACATGCAATCAAATGGTGTGATCCCGTTGGACTATGCGCTTTTCCGCCCCCTCCCTCCTAACAAGGAAGCTGTGGATGCTAATACACTCCTTCATT ACACTAACGTCTTTGATGCCATTGTTGATGCAGCATATTTTTCAATGTCCTATCTGAACTTCACCAAAATCCCTATTTTTGTGACTGAGTCTGGCTGGCC ATCCAAAGGTGACTCATCTGAGCCAGATGCAACACTTGACAATGCTAACACTTACAACAGCAACTTGATTAGGCATGTGCTTAATAACACAGGCACTCCC AAACATCCTGGGATTGTGGTTAGTACATATATTTACGAGCTCTATAATGAGGATTCGAGACCCGGGCCAGTCTCCGAAAAGAACTGGGGGCTTTTTGATG CCAACGGCATGCCAGTTTATACCTTACACTTGACTGGTGCTGGTACTTTACTTGCAAATGACACCACAAACCAAACCTTTTGTGTTGCAAAGGAAGGTGC TGACCCAAAGATGCTACAGGCAGCTCTTGATTGGGCTTGTGGACCTGGGAAAGTTGATTGCTCATTCTTGTTACAAGGGCAGCCATGCTATGAGCCAGAT AATGTTGTTGCTCATTCAACATATGCTTTCAATGCTTATTTCCAGAAAATGGCCAAGTCTCCTGGTACTTGTGATTTTAAAGGTGTAGCCACCATCACCA CCAGTGACCCAAGTCATGGTTCCTGTATATTTCCTGGAAGTGCTGGAAGAAATGGTACCTTCCCAAATACAACTTCTCTGGCGCCGTCATCAAATTCATC GACATCTGGTTGCCATTCCGTATATTTCTATGGTGCTGGTTCCTTCACAACCTCTGTGATTATAGGTGTTTTACTAATGAGCATGGTTTGCTTGTAA
AA sequence Show only first row Show all	>Potri.010G108500.1 pacid=42799015 polypeptide=Potri.010G108500.1.p locus=Potri.010G108500 ID=Potri.010G108500.1.v4.1 annot-version=v4.1 MALLLLLFLLMVPVVSADEDAFIGVNIGTALSDMPSPTQVVALLKAQNIRHVRLYDADRAMLHALANTGIRVTVSVPNEQLLGIGQSNATAANWVARNVI AHVPATNITAIAVGSEILTTLPNAAPVLVSALKFIHSALVASNLDGQIKVSTPQSSSIILDSFPPSQAFFNRSWDPVMVPLLKFLQSTGSYFMLNVYPYY DYMQSNGVIPLDYALFRPLPPNKEAVDANTLLHYTNVFDAIVDAAYFSMSYLNFTKIPIFVTESGWPSKGDSSEPDATLDNANTYNSNLIRHVLNNTGTP KHPGIVVSTYIYELYNEDSRPGPVSEKNWGLFDANGMPVYTLHLTGAGTLLANDTTNQTFCVAKEGADPKMLQAALDWACGPGKVDCSFLLQGQPCYEPD NVVAHSTYAFNAYFQKMAKSPGTCDFKGVATITTSDPSHGSCIFPGSAGRNGTFPNTTSLAPSSNSSTSGCHSVYFYGAGSFTTSVIIGVLLMSMVCL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01630			O-Glycosyl hydrolases family 1...		Potri.010G108500 [exp]	0	1
AT5G41070		DRB5	dsRNA-binding protein 5 (.1)		Potri.017G063700 [exp]	3.00	0.7615
AT2G47350			HIT zinc finger ;PAPA-1-like c...		Potri.014G119600 [exp]	4.24	0.7328
AT3G51060		SRS1, STY1	STYLISH 1, SHI RELATED SEQUENC...		Potri.005G118200 [exp]	4.58	0.7313	SHI2,Pt-STY1.2
AT1G75060			unknown protein		Potri.001G101600 [exp]	10.95	0.7297
AT1G31930		XLG3	extra-large GTP-binding protei...		Potri.001G135300 [exp]	13.78	0.7276
AT5G63700			zinc ion binding;DNA binding (...		Potri.001G305900 [exp]	15.71	0.6762
AT2G44150		SDG7, ASHH3	SET DOMAIN-CONTAINING PROTEIN ...		Potri.017G000400 [exp]	17.23	0.7085
AT2G33490			hydroxyproline-rich glycoprote...		Potri.001G061500 [exp]	18.97	0.7092
AT3G01516			unknown protein		Potri.001G349700 [exp]	21.84	0.6536
					Potri.015G116750 [exp]	22.80	0.6761

Compare expression of checked genes

Potri.010G108500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.