Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PE6.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23200 579 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G45220 540 / 0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G60730 462 / 9e-159 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51490 455 / 8e-156 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G47400 457 / 1e-155 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G53370 451 / 1e-153 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT4G02320 441 / 1e-150 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT5G51500 440 / 7e-150 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G49220 439 / 1e-148 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G43270 428 / 3e-145 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G127700 [exp] 578 / 0 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126800 [exp] 562 / 0 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 554 / 0 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G145500 [exp] 552 / 0 AT2G45220 670 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127500 [exp] 518 / 0 AT2G45220 573 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127800 [exp] 500 / 1e-173 AT3G47400 649 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126900 [exp] 482 / 2e-166 AT3G47400 640 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.002G202500 [exp] 475 / 3e-163 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G014500 [exp] 460 / 1e-156 AT3G49220 789 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009110 [exp] 574 / 0 AT1G23200 501 / 1e-173 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10038917 [exp] 561 / 0 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 537 / 0 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027202 [exp] 535 / 0 AT2G45220 620 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027206 [exp] 492 / 1e-170 AT2G45220 551 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10015877 [exp] 455 / 3e-156 AT3G60730 535 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031140 [exp] 451 / 8e-154 AT5G51500 587 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10031719 [exp] 449 / 4e-153 AT5G51500 570 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008203 [exp] 447 / 1e-152 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10018103 [exp] 445 / 1e-150 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.010G109400.1 pacid=42798442 polypeptide=Potri.010G109400.1.p locus=Potri.010G109400 ID=Potri.010G109400.1.v4.1 annot-version=v4.1 ATGGATAAGCAGCAGCTTGTTCTTGGCTTTTTGAATGCCTATTTTCTATTTTATTCACTTGCCCTTGTGCACGGTGACAGTGTCACTTCGTGTGACCAGA CCCCATTTCCTGAAGCATGCAACTATTTTATCGACACCAATATCTCTAAAACCCCACCGTTATTTGCATTACGCGACCAATCCTTGTCGATAACTATGAA CAAAGCCATAGAAGCTCACCAGATGGTGTCATCTATGGAGTTGAGTTCATTTAATCAACAGGCCAAGTTGGCATGGGATGATTGTTTAAAGCTATACGAG GATACGGTCGATCATGTTAACCGTTCAATGAGCTCTAACAATCTAGCTGACTCTCAAACTTGGCTAAGTGCAGCCATTGCCAACCAAAGAACATGCGAGA ATGGCTTTATTGACTTTAACATTGTCTCTTATTTAGAATCCCTTCCAAATATGCTACGCAACTTCACCAAATTGCTTAGCAATACACTTTCCCTAAACAA GGCCATAATCTCCTCAACACCTATACTACTTGATACCAAACAAGATGGTGGCCGCCGAAGATTGCTTGTTGATGGATTCCCATCATGGGTTCCGGCTAGT GATCGAAAGCTTCTGCAATCAAATGGCCGGGCTGCACCAAAGGCTGATATTGTAGTTGCCCAAGATGGGTCTGGTGATTACAAAACCATATCCGAGGCAG TGGCTGCATCTGCTAAGCTTAGGAGCGGGACTAAGAGTAAGAGATTTGTTATATACGTGAAAGGGGGTGTTTACAAAGAGAACGTGGAGATTAAGAAGTC GATGAAGAATTTAATGTTCGTTGGAGATGGAATTGATGCTACAGTCATTACTAGTAATAAAAATACCCAAGATGGCACCACAACTTTTCGCTCCGCAACT GTTGGTGTTTCTGGTAAAGGCTTCATTGCCAGAGACATAACATTTGAAAACACTGCCGGACCACAAAAACACCAAGCAGTAGCCCTGCGATCTGGTTCCG ATTTCTCAGTTTTCTATAGCTGTAGCTTCAAGGGCTACCAAGACACCTTATACGTGCACTCCCAGCGACAATTCTACCGGGATTGTGACATATATGGAAC TGTAGACTTCATTTTCGGTGATGCTGTTGCTGTTTTGCAGAACTGCAACATATATGTTAGGAGACCGATGAGTAAGCAAACGAACACTGTCACTGCACAA GGAAGAACTGACCCTGATGAGAACACAGGAATAGTAATTCATAATTCAAGGGTTATGGCAGCTCCAGACTTGAGACCAGTGCAGGGTTCATTTAAGAGTT ATTTGGGGAGGCCATGGAAGAAATATTCAAGGACTGTGTTCTTAAAGAGCAATATAGATGGACTTATTGACCCTGCAGGTTGGTTACCATGGAAGGGTGA TTTTGCTTTGAGTACTCTATATTATGGTGAGTATATGAGTACTGGGAGCGGAGCAAGCACCAAAGGGAGGGTTAAGTGGCCTGGATATCACACAATCACA AGCCCACTGGAGGCTGGAAAGTTCACTGTTGAGAACTTTTTGGCCGGGAATTCTTGGATTTCGGCTGCCGGAGTGCCCTTTGAGTCTGGTTTATAA
AA sequence Show only first row Show all	>Potri.010G109400.1 pacid=42798442 polypeptide=Potri.010G109400.1.p locus=Potri.010G109400 ID=Potri.010G109400.1.v4.1 annot-version=v4.1 MDKQQLVLGFLNAYFLFYSLALVHGDSVTSCDQTPFPEACNYFIDTNISKTPPLFALRDQSLSITMNKAIEAHQMVSSMELSSFNQQAKLAWDDCLKLYE DTVDHVNRSMSSNNLADSQTWLSAAIANQRTCENGFIDFNIVSYLESLPNMLRNFTKLLSNTLSLNKAIISSTPILLDTKQDGGRRRLLVDGFPSWVPAS DRKLLQSNGRAAPKADIVVAQDGSGDYKTISEAVAASAKLRSGTKSKRFVIYVKGGVYKENVEIKKSMKNLMFVGDGIDATVITSNKNTQDGTTTFRSAT VGVSGKGFIARDITFENTAGPQKHQAVALRSGSDFSVFYSCSFKGYQDTLYVHSQRQFYRDCDIYGTVDFIFGDAVAVLQNCNIYVRRPMSKQTNTVTAQ GRTDPDENTGIVIHNSRVMAAPDLRPVQGSFKSYLGRPWKKYSRTVFLKSNIDGLIDPAGWLPWKGDFALSTLYYGEYMSTGSGASTKGRVKWPGYHTIT SPLEAGKFTVENFLAGNSWISAAGVPFESGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G23200			Plant invertase/pectin methyle...		Potri.010G109400 [exp]	0	1	PE6.1
AT5G06530		AtABCG22, ABCG2...	Arabidopsis thaliana ATP-bindi...		Potri.016G065900 [exp]	1.00	0.9582
AT2G21080			unknown protein		Potri.006G279200 [exp]	2.44	0.9581
AT5G61520			Major facilitator superfamily ...		Potri.004G233700 [exp]	2.44	0.9504
AT2G16250			Leucine-rich repeat protein ki...		Potri.002G260100 [exp]	2.64	0.9378
AT5G45800		MEE62	maternal effect embryo arrest ...		Potri.004G058500 [exp]	4.00	0.9372
AT2G26040		RCAR14, PYL2	regulatory components of ABA r...		Potri.018G054400 [exp]	6.00	0.9335
					Potri.016G003750 [exp]	7.21	0.9260
AT1G17220		FUG1	fu-gaeri1, Translation initiat...		Potri.001G436300 [exp]	8.24	0.9503
AT1G70170		MMP	matrix metalloproteinase (.1)		Potri.019G073800 [exp]	8.77	0.9276
AT1G19640		JMT	jasmonic acid carboxyl methylt...		Potri.005G230100 [exp]	9.79	0.9107	JMT.1

Compare expression of checked genes

Potri.010G109400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.