Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PGM1.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70730 1006 / 0 PGM2 phosphoglucomutase 2, Phosphoglucomutase/phosphomannomutase family protein (.1.2.3) AT1G23190 999 / 0 PGM3 phosphoglucomutase 3, Phosphoglucomutase/phosphomannomutase family protein (.1) AT5G51820 671 / 0 STF1, PGM1, ATPGMP, PGM STARCH-FREE 1, ARABIDOPSIS THALIANA PHOSPHOGLUCOMUTASE, phosphoglucomutase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G132500 [exp] 1113 / 0 AT1G23190 987 / 0.0 phosphoglucomutase 3, Phosphoglucomutase/phosphomannomutase family protein (.1) Potri.012G132500 [exp] 674 / 0 AT5G51820 1029 / 0.0 STARCH-FREE 1, ARABIDOPSIS THALIANA PHOSPHOGLUCOMUTASE, phosphoglucomutase (.1) Potri.015G134700 [exp] 665 / 0 AT5G51820 1033 / 0.0 STARCH-FREE 1, ARABIDOPSIS THALIANA PHOSPHOGLUCOMUTASE, phosphoglucomutase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021777 [exp] 1050 / 0 AT1G70730 1026 / 0.0 phosphoglucomutase 2, Phosphoglucomutase/phosphomannomutase family protein (.1.2.3) Lus10001596 [exp] 1049 / 0 AT1G23190 1024 / 0.0 phosphoglucomutase 3, Phosphoglucomutase/phosphomannomutase family protein (.1) Lus10003712 [exp] 1043 / 0 AT1G23190 1017 / 0.0 phosphoglucomutase 3, Phosphoglucomutase/phosphomannomutase family protein (.1) Lus10034595 [exp] 1038 / 0 AT1G70730 1017 / 0.0 phosphoglucomutase 2, Phosphoglucomutase/phosphomannomutase family protein (.1.2.3) Lus10031669 [exp] 659 / 0 AT5G51820 1003 / 0.0 STARCH-FREE 1, ARABIDOPSIS THALIANA PHOSPHOGLUCOMUTASE, phosphoglucomutase (.1) Lus10027400 [exp] 646 / 0 AT5G51820 966 / 0.0 STARCH-FREE 1, ARABIDOPSIS THALIANA PHOSPHOGLUCOMUTASE, phosphoglucomutase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00408 [poplar] [flax] PGM_PMM_IV Phosphoglucomutase/phosphomannomutase, C-terminal domain PF02878 [poplar] [flax] PGM_PMM_I Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I PF02879 [poplar] [flax] PGM_PMM_II Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II PF02880 [poplar] [flax] PGM_PMM_III Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
Representative CDS sequence Show only first row Show all	>Potri.010G109500.2 pacid=42797053 polypeptide=Potri.010G109500.2.p locus=Potri.010G109500 ID=Potri.010G109500.2.v4.1 annot-version=v4.1 ATGGTGCTGTTCAATGTTTCACGAGTGGAGACTACGCCTTTCGATGGCCAGAAACCTGGAACTTCTGGCCTTCGCAAGAAGGTGAAGGTGTTCAAGCAAC CTAATTATCTGGAGAATTTTGTCCAATCAACCTTCAATGCACTTACTCCACAAAAAGTTAGAGGTGCCACACTTGTTGTTTCTGGTGATGGTCGCTATTT CTCAAAGGATGCCATTCAGATAATTATGAAGATGGCAGCTGGAAATGGAGTACGACGTGTCTGGGTTGGTCAGAACGGACTGCTTTCAACTCCTGCTGTG TCTGCTGTAATACGTGAAAGAGTTGGGGTAGATGGATCCAGAGCAACAGGAGCATTTATATTGACAGCAAGTCACAATCCAGGTGGTCCAAATGAGGATT TTGGGATCAAATATAACATGGAAAATGGTGGACCTGCTCCTGAGGGAATAACAGATGAGATTTATGAGAACACTAAAGCAATAAAGGAGTACTTAACTGC AGATCTGCCTGATGTGGATATTACAGCAATTGGTGTAACCAGCTTTGGTGGGCCTGATGGACAGTTTGATGTTGAGGTTTTTGACTCGGCAAGCGATTAT GTCAAATTGATGAAGTCGATTTTTGACTTTGAGTCCATCCAGAAGCTCCTTTCCTCTCCAAATTTCACTTTCTGCTATGATGCGCTACATGGAGTTGCTG GGGCTTATGCAAAACGCATTTTTGTGGAGGAGCTTGGAGCACAAGAGAGTTCCTTAATGAACTGTGTACCCAAGGAGGACTTTGGAGGAGGGCATCCAGA TCCCAATCTCACATATGCAAAGGAATTGGTTGCTCGCATGGGATTGGGTAAATCTAACTCTGAAGTTGAACCGCCAGAATTTGGTGCTGCTGCTGATGGT GATGCAGATCGCAATATGATCCTTGGTAAAAGGTTCTTTGTTACTCCATCAGATTCTGTTTCCATTATTGCTGCAAATGCAGTGGAGGCCATACCATATT TCTCTGCAGGTCTAAAAGGAGTTGCAAGGAGCATGCCAACTTCTTCTGGCCTTGACATTGTGGCAAAAAATCTAAACTTAAAGTTTTTTGAGGTTCCAAC TGGATGGAAATTTTTTGGTAATTTGATGGATGCTGGTTTATGTTCAATCTGCGGGGAAGAGAGTTTTGGAACTGGCTCAGACCACATACGCGAGAAGGAT GGAATTTGGGCAGTTCTGGCTTGGCTATCCATACTGGCGTTCAAGAATAAAGAAAATCTTGGTGGTGGAGAGCTTGTAACAGTTGAAGATATAGTTCGCA ACCATTGGGCTACCTATGGTCGCCACTACTATACTCGATATGACTACGAGAATGTTGATGCAGGTGCAGCAAAGGAACTAATGGCATACTTAGTCAAGCT GCAATCTTCCCTTGCTGAAGTTAACGAGATTGTCGGTGGGATACGATCAGATGTGTCGAAGGTTGTTCATGCTGACGAGTTTGAATACAAAGATCCTATT GATGGTTCTATTTCAAAACACCAGGGTATTCGATACTTGTTCGAGGATGGCTCAAGACTGGTTTTCCGCCTCTCAGGAACTGGTTCAGAAGGTGCAACCA TCAGGCTCTACATTGAGCAATACGAAAAAGATCCATCAAAAACTGGAAGAGATTCTCAAGATGCACTTGCTCCTCTTGTGGCAGTTGCTCTTGGTCTTTC TAAGATGCAGGAATTCACTGGCCGATCTGCACCAACTGTCATTACATAG
AA sequence Show only first row Show all	>Potri.010G109500.2 pacid=42797053 polypeptide=Potri.010G109500.2.p locus=Potri.010G109500 ID=Potri.010G109500.2.v4.1 annot-version=v4.1 MVLFNVSRVETTPFDGQKPGTSGLRKKVKVFKQPNYLENFVQSTFNALTPQKVRGATLVVSGDGRYFSKDAIQIIMKMAAGNGVRRVWVGQNGLLSTPAV SAVIRERVGVDGSRATGAFILTASHNPGGPNEDFGIKYNMENGGPAPEGITDEIYENTKAIKEYLTADLPDVDITAIGVTSFGGPDGQFDVEVFDSASDY VKLMKSIFDFESIQKLLSSPNFTFCYDALHGVAGAYAKRIFVEELGAQESSLMNCVPKEDFGGGHPDPNLTYAKELVARMGLGKSNSEVEPPEFGAAADG DADRNMILGKRFFVTPSDSVSIIAANAVEAIPYFSAGLKGVARSMPTSSGLDIVAKNLNLKFFEVPTGWKFFGNLMDAGLCSICGEESFGTGSDHIREKD GIWAVLAWLSILAFKNKENLGGGELVTVEDIVRNHWATYGRHYYTRYDYENVDAGAAKELMAYLVKLQSSLAEVNEIVGGIRSDVSKVVHADEFEYKDPI DGSISKHQGIRYLFEDGSRLVFRLSGTGSEGATIRLYIEQYEKDPSKTGRDSQDALAPLVAVALGLSKMQEFTGRSAPTVIT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70730		PGM2	phosphoglucomutase 2, Phosphog...		Potri.010G109500 [exp]	0	1	PGM1.1
AT5G01010			unknown protein		Potri.016G143700 [exp]	10.00	0.8877
AT1G60780		HAP13	HAPLESS 13, Clathrin adaptor c...		Potri.008G187600 [exp]	11.70	0.8913
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.005G146800 [exp]	18.00	0.8811
AT1G50940		ETFALPHA	electron transfer flavoprotein...		Potri.011G135600 [exp]	19.18	0.8194
AT2G45060			Uncharacterised conserved prot...		Potri.002G142900 [exp]	24.39	0.8846
AT4G23690			Disease resistance-responsive ...		Potri.013G142702 [exp]	27.05	0.8846
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Potri.017G144541 [exp]	27.98	0.8041
AT5G37310			Endomembrane protein 70 protei...		Potri.004G075450 [exp]	28.93	0.8866
AT4G17890		UBP20, AGD8	ARF-GAP domain 8 (.1.2)		Potri.001G142100 [exp]	30.13	0.8853	UBP20.2
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Potri.005G029900 [exp]	32.86	0.8583

Compare expression of checked genes

Potri.010G109500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.