Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70740 522 / 0 Protein kinase superfamily protein (.1.2) AT4G23180 346 / 2e-113 RLK4, CRK10 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) AT4G11530 340 / 5e-111 CRK34 cysteine-rich RLK (RECEPTOR-like protein kinase) 34 (.1) AT4G23140 335 / 4e-109 RLK5, CRK6 cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.1), cysteine-rich RLK (RECEPTOR-like protein kinase) 6 (.2) AT4G23270 334 / 4e-109 CRK19 cysteine-rich RLK (RECEPTOR-like protein kinase) 19 (.1) AT4G05200 333 / 3e-108 CRK25 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) AT4G23200 332 / 3e-108 CRK12 cysteine-rich RLK (RECEPTOR-like protein kinase) 12 (.1) AT4G23190 330 / 3e-107 AT-RLK3, CRK11 RECEPTOR LIKE PROTEIN KINASE 3, cysteine-rich RLK (RECEPTOR-like protein kinase) 11 (.1) AT4G00970 327 / 3e-106 CRK41 cysteine-rich RLK (RECEPTOR-like protein kinase) 41 (.1) AT4G23280 327 / 3e-106 CRK20 cysteine-rich RLK (RECEPTOR-like protein kinase) 20 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G132300 [exp] 674 / 0 AT1G70740 499 / 6e-177 Protein kinase superfamily protein (.1.2) Potri.004G024632 [exp] 334 / 2e-112 AT4G23180 527 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.012G055500 [exp] 332 / 2e-111 AT4G23180 364 / 2e-120 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G026350 [exp] 338 / 2e-110 AT4G21410 610 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Potri.004G024800 [exp] 337 / 5e-110 AT4G23180 663 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G027501 [exp] 333 / 6e-109 AT4G23180 553 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.004G024404 [exp] 334 / 1e-108 AT4G23180 671 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Potri.011G028400 [exp] 332 / 7e-108 AT4G05200 709 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Potri.004G025800 [exp] 332 / 9e-108 AT4G23180 648 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001595 [exp] 558 / 0 AT1G70740 518 / 0.0 Protein kinase superfamily protein (.1.2) Lus10003711 [exp] 548 / 0 AT1G70740 502 / 2e-178 Protein kinase superfamily protein (.1.2) Lus10009631 [exp] 336 / 9e-113 AT4G21390 343 / 2e-115 S-locus lectin protein kinase family protein (.1) Lus10018382 [exp] 339 / 1e-110 AT4G21410 605 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 29 (.1) Lus10007632 [exp] 339 / 2e-110 AT4G05200 624 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 25 (.1) Lus10031199 [exp] 337 / 2e-106 AT1G56130 1261 / 0.0 Leucine-rich repeat transmembrane protein kinase (.1) Lus10038940 [exp] 318 / 3e-106 AT4G23180 341 / 8e-112 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1) Lus10007602 [exp] 328 / 4e-105 AT1G65800 788 / 0.0 receptor kinase 2 (.1) Lus10018405 [exp] 327 / 4e-104 AT4G21380 952 / 0.0 receptor kinase 3 (.1) Lus10018379 [exp] 321 / 1e-103 AT4G23180 566 / 0.0 cysteine-rich RLK (RECEPTOR-like protein kinase) 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.010G109700.2 pacid=42796891 polypeptide=Potri.010G109700.2.p locus=Potri.010G109700 ID=Potri.010G109700.2.v4.1 annot-version=v4.1 ATGACAAAGCTCAAGAATTGCTTGAAGAGTCTGCTGAAGCCTTTCAAGTTCAATTCAAGCAAAGAGAGACTCGGAGAGGAGGACATGGAGACTATTGCTG CACGGGAACAGAAGCAGTTTTCATTTGAAACTCTGGTCTCTGCTACCAAAGATTTCCACCTAACTCACAAGCTTGGTGAAGGTGGATTTGGACCTGTATA CAAGGGGAAGTTGGATGATGGGAGAGAGATTGCAGTGAAGAAGTTGTCCCATAGCTCAAATCAGGGGAAGAAAGAATTCACGAATGAGGCCAAGCTATTA TCACGTGTCCAGCACCGAAATGTTGTTAATTTGTTAGGATATTGTGCACATGGTGTGGAAAAGCTACTGGTTTATGAGTATGTTGCTAATGAGAGCCTTG ACAAGCTTCTGTTCAAATCTGATAAAAGACAACTGCTTGATTGGAATCGGAGATATGATATACTAATTGGCATTGCACGGGGTTTGCTTTACCTTCATGA GGATTCACACAATTGCATCATCCACCGTGACATCAAGGCAAGCAATATTTTACTGGATGATAAATGGGTTCCTAAGATTGCTGATTTTGGCATGGCCCGT CTCTTCCCTGAAGATCAAACACATGTCAACACCCGTGTTGCTGGTACCAATGGGTATATGGCTCCAGAGTATGTCATGCATGGACATTTATCAGTGAAGG CAGATGTATTTAGCTTTGGGGTTTTGGTTCTGGAGCTGATCAGTGGCCAGCGAAATTCAACATTTAGTCAACAGCATGCTGATGCACAGAATCTACTTGA TTGGGCATACAAGCTTCACAAAAAAAATAGGAGTCTGGAGATTATGGACCCAGTACTAGCATCCTCAGCAGCTGCTGAACAAGTAAAAACTTGTGTTCAT TTAGGGCTGCTATGCACACAAGGTGACCCACAGTTACGGCCAGATATGCGGCGTATTGTTGTCCTGTTGTCGAAGAAAACTTGCAGTCTAGAAGAACCAA CCAGACCTGGAGTTCCTGGTTCTAGATATAGGAGAGCTCGTAGACCAGCAGGAATGTCTTCGACTGCTGGAACATCCGATACTGCTAGAACATTTGGTGA ATCTGATTCCCGTACATTTGATTCGAGTTCAAATACTAATACTGCCACTGCATCTACCTCAGCTCATACAATCCCCAGATTAGATCCTCATGGTAAACGT CCAATTGAAAGCTAA
AA sequence Show only first row Show all	>Potri.010G109700.2 pacid=42796891 polypeptide=Potri.010G109700.2.p locus=Potri.010G109700 ID=Potri.010G109700.2.v4.1 annot-version=v4.1 MTKLKNCLKSLLKPFKFNSSKERLGEEDMETIAAREQKQFSFETLVSATKDFHLTHKLGEGGFGPVYKGKLDDGREIAVKKLSHSSNQGKKEFTNEAKLL SRVQHRNVVNLLGYCAHGVEKLLVYEYVANESLDKLLFKSDKRQLLDWNRRYDILIGIARGLLYLHEDSHNCIIHRDIKASNILLDDKWVPKIADFGMAR LFPEDQTHVNTRVAGTNGYMAPEYVMHGHLSVKADVFSFGVLVLELISGQRNSTFSQQHADAQNLLDWAYKLHKKNRSLEIMDPVLASSAAAEQVKTCVH LGLLCTQGDPQLRPDMRRIVVLLSKKTCSLEEPTRPGVPGSRYRRARRPAGMSSTAGTSDTARTFGESDSRTFDSSSNTNTATASTSAHTIPRLDPHGKR PIES

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70740			Protein kinase superfamily pro...		Potri.010G109700 [exp]	0	1
AT5G40100			Disease resistance protein (TI...		Potri.006G283100 [exp]	2.23	0.7336
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.005G014900 [exp]	2.82	0.7143
AT5G58470		TAF15b	TBP-associated factor 15B (.1....		Potri.001G281300 [exp]	4.47	0.7038
AT2G17787			unknown protein		Potri.005G242300 [exp]	4.58	0.7091
AT4G28990			RNA-binding protein-related (....		Potri.006G160500 [exp]	8.36	0.6772
AT1G02610			RING/FYVE/PHD zinc finger supe...		Potri.014G121900 [exp]	11.48	0.6228
AT1G21200	Trihelix		sequence-specific DNA binding ...		Potri.003G204700 [exp]	14.07	0.6836
AT2G14170		ALDH6B2	aldehyde dehydrogenase 6B2 (....		Potri.009G078600 [exp]	16.12	0.5857	ALDH6.4
AT1G75080	BZR	BZR1	BRASSINAZOLE-RESISTANT 1, Bras...		Potri.014G041600 [exp]	16.73	0.6198	Pt-BES1.1
AT1G01730			unknown protein		Potri.014G082600 [exp]	17.14	0.6565

Compare expression of checked genes

Potri.010G109700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.