Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01600 732 / 0 ENTH/ANTH/VHS superfamily protein (.1) AT1G14910 715 / 0 ENTH/ANTH/VHS superfamily protein (.1) AT4G25940 539 / 0 ENTH/ANTH/VHS superfamily protein (.1) AT5G57200 492 / 6e-169 ENTH/ANTH/VHS superfamily protein (.1) AT5G35200 442 / 2e-150 ENTH/ANTH/VHS superfamily protein (.1) AT1G03050 226 / 4e-66 ENTH/ANTH/VHS superfamily protein (.1) AT1G05020 184 / 2e-50 ENTH/ANTH/VHS superfamily protein (.1) AT4G02650 182 / 5e-50 ENTH/ANTH/VHS superfamily protein (.1) AT2G25430 148 / 5e-38 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1) AT4G32285 143 / 3e-36 ENTH/ANTH/VHS superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G132100 [exp] 956 / 0 AT2G01600 749 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G075800 [exp] 581 / 0 AT2G01600 543 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G142800 [exp] 580 / 0 AT5G57200 655 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.T125107 [exp] 456 / 1e-155 AT5G35200 644 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G125284 [exp] 456 / 1e-155 AT5G35200 646 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G065100 [exp] 448 / 2e-152 AT5G35200 621 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.T124907 [exp] 248 / 5e-79 AT5G35200 357 / 4e-122 ENTH/ANTH/VHS superfamily protein (.1) Potri.006G118100 [exp] 256 / 1e-77 AT1G03050 605 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Potri.018G128200 [exp] 213 / 2e-61 AT4G32285 626 / 0.0 ENTH/ANTH/VHS superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013469 [exp] 842 / 0 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10007933 [exp] 832 / 0 AT2G01600 758 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10021796 [exp] 815 / 0 AT2G01600 756 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10034610 [exp] 805 / 0 AT2G01600 765 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10025462 [exp] 548 / 0 AT4G25940 685 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10038122 [exp] 454 / 2e-154 AT5G35200 714 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10005184 [exp] 454 / 2e-154 AT5G35200 702 / 0.0 ENTH/ANTH/VHS superfamily protein (.1) Lus10003642 [exp] 321 / 5e-103 AT5G35200 380 / 2e-126 ENTH/ANTH/VHS superfamily protein (.1) Lus10015335 [exp] 286 / 2e-88 AT4G25940 385 / 6e-126 ENTH/ANTH/VHS superfamily protein (.1) Lus10019402 [exp] 216 / 1e-62 AT2G25430 580 / 0.0 epsin N-terminal homology (ENTH) domain-containing protein / clathrin assembly protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0009 [poplar] [flax] ENTH_VHS PF07651 [poplar] [flax] ANTH ANTH domain
Representative CDS sequence Show only first row Show all	>Potri.010G110000.1 pacid=42799430 polypeptide=Potri.010G110000.1.p locus=Potri.010G110000 ID=Potri.010G110000.1.v4.1 annot-version=v4.1 ATGGGTACACTTCAGACATGGCGAAAAGCCTATGGCGCTCTCAAAGACTCCACCAAAGTCGGTCTTGCTCATGTCAATAGTGATTATGCGGATTTGGATG TGGCCGTAGTCAAAGCAACTAACCACGTCGAGTGTCCTCCAAAAGAGCGCCATCTTAGAAAAATCTTGGTTGCCACGTCAACGATTCGGCCTCGAGCTGA TGTTGCTTATTGCATTCATGCTCTTTCCCGCCGATTGGCCAAAACTCATAGTTGGACGGTAGCTTTGAAAATACTGATTGTGATCCATAGATTATTAAGA GAGGGCGATCCTACTTTCAGAGAAGAACTTCTGAATTTCTCCCAGAGAGGACACATCCTCCAACTTTCTAATTTCAAGGATGATTCAAGTCCTATTGCTT GGGATTGCTCTGCTTGGGTGCGTACATATGCACTTTTTTTGGAGGAACGGCTTGAGTGCTTCAAAATTCTGAAGTATGACATTGAAGCAGAGCGTCTTCC AAGACCTGGCCAAGGACAGGATAAGGGCCACAGCCGGACTAGGGACTTGGACAGTGAAGAACTGTTGGAACAGTTGCCTGCCTTACAGCAGCTGTTGTAT CGTCTTGTTGGCTGTCGGCCAGAAGGTGCAGCAGTTGGAAATTATATTATACAGTATGCTCTGGCTCTGGTATTGAAGGAGAGCTTTAAAATATACTGTT CTGTTAATGATGGGATCATCAATCTTGTGGATAAGTTTTTTGAGATGCCAAGACACGAAGCTATTGCAGCCCTTGATATCTACAAACGAGCCGGCCAACA GGCTGGTAACCTTTCTGATTTCTATGAACTATGCAAAGGATTGGAACTTGCTAGGAATTTCCAGTTTCCTGTTTTGAGAGAGCCTCCACAATCCTTTCTT ACAACCATGGAAGAGTACATAAGAGAGGCACCGAGAGTTGTTTCCGTTCCAAACGAGCCATTGCTTCAATTGACCTACAGACCAGAAGAAGGTCCTTCAG AAGATGCCAAATCATCCGGTGATGAACCTGAGCCACCCCCTTCAGATGATGTTGCTGTCTCCAATGTTGAGATTGCTCCTCCTGCTTCTACAGCCCCTCC TCAGAACAGCGTAGACACTGGAGATTTGCTGGGATTGAATTATGCAGCTCCCGATGCATCTTCCATTGAGGAAAGCAATGCTTTGGCTCTGGCTATAATT CCATCTGAATCAAATGCTGCACCCACATTCAATTCTGCTGCTGGTCAAGCAAAAGATTTTGATCCTACTGGATGGGAACTTGCCCTGGTCACCACTCCAA GCAGCAATATTTCTGCCACTAATGAGAGGCAATTGGCTGGTGGCTTGGACTCGCTCACTCTGGACAGTTTATACCATGAAGGAGCATATCGAGCTGCCCA GCAGCCTGTTTATGGAGCACCAGCCCCTAATCCATTTGAGGTACAAGATCCATTTGCTTTGTCAAACAGCATTGCTCCTCCTCCTTCGGTCCAAATGGCA GCAATGGCTCAACAGCCGCACAATCCTTTCAGTCCATATCAACCTCCCTACCCACAGCCACAGCAGCAACATGTGATGACGAGCCATGCAAATCCTTTTG GTGATACAACAGGGTTTGGGGCATTTCCTGCCCATCCTGAGACTAATAATCCCTTTGGAAGCACAAGTCTTTTGTAA
AA sequence Show only first row Show all	>Potri.010G110000.1 pacid=42799430 polypeptide=Potri.010G110000.1.p locus=Potri.010G110000 ID=Potri.010G110000.1.v4.1 annot-version=v4.1 MGTLQTWRKAYGALKDSTKVGLAHVNSDYADLDVAVVKATNHVECPPKERHLRKILVATSTIRPRADVAYCIHALSRRLAKTHSWTVALKILIVIHRLLR EGDPTFREELLNFSQRGHILQLSNFKDDSSPIAWDCSAWVRTYALFLEERLECFKILKYDIEAERLPRPGQGQDKGHSRTRDLDSEELLEQLPALQQLLY RLVGCRPEGAAVGNYIIQYALALVLKESFKIYCSVNDGIINLVDKFFEMPRHEAIAALDIYKRAGQQAGNLSDFYELCKGLELARNFQFPVLREPPQSFL TTMEEYIREAPRVVSVPNEPLLQLTYRPEEGPSEDAKSSGDEPEPPPSDDVAVSNVEIAPPASTAPPQNSVDTGDLLGLNYAAPDASSIEESNALALAII PSESNAAPTFNSAAGQAKDFDPTGWELALVTTPSSNISATNERQLAGGLDSLTLDSLYHEGAYRAAQQPVYGAPAPNPFEVQDPFALSNSIAPPPSVQMA AMAQQPHNPFSPYQPPYPQPQQQHVMTSHANPFGDTTGFGAFPAHPETNNPFGSTSLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01600			ENTH/ANTH/VHS superfamily prot...		Potri.010G110000 [exp]	0	1
AT4G00330		CRCK2	calmodulin-binding receptor-li...		Potri.014G087200 [exp]	1.00	0.8146
AT5G58060		ATYKT61, ATGP1,...	SNARE-like superfamily protein...		Potri.018G110700 [exp]	7.87	0.7445
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Potri.003G155800 [exp]	9.32	0.7368
					Potri.010G058400 [exp]	16.91	0.6919
AT1G63800		UBC5	ubiquitin-conjugating enzyme 5...		Potri.014G086600 [exp]	18.30	0.7211	Pt-UBC4.2
AT5G53000		TAP46	2A phosphatase associated prot...		Potri.015G012200 [exp]	23.91	0.6607
AT5G53300		UBC10	ubiquitin-conjugating enzyme 1...		Potri.012G033000 [exp]	25.23	0.7152	UBC9.1
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Potri.013G006400 [exp]	45.82	0.6968
AT3G03940			Protein kinase family protein ...		Potri.019G034500 [exp]	56.92	0.6064
AT5G50130			NAD(P)-binding Rossmann-fold s...		Potri.015G081102 [exp]	65.52	0.6602

Compare expression of checked genes

Potri.010G110000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.