Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23180 837 / 0 ARM repeat superfamily protein (.1) AT3G46510 51 / 3e-06 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT2G44900 51 / 4e-06 ARABIDILLO-1, ARABIDILLO1 F-box Armadillo protein 1, ARABIDILLO-1 (.1) AT1G23030 51 / 4e-06 PUB11 ARM repeat superfamily protein (.1) AT1G77460 50 / 6e-06 Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.1), Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.2) AT3G60350 50 / 6e-06 ARABIDILLO-2, ARABIDILLO2 F-box Armadillo protein 2, ARABIDILLO-2 (.1) AT5G42340 50 / 1e-05 PUB15 Plant U-Box 15 (.1) AT5G58680 48 / 2e-05 ARM repeat superfamily protein (.1) AT3G01400 48 / 2e-05 ARM repeat superfamily protein (.1) AT2G23140 47 / 7e-05 RING/U-box superfamily protein with ARM repeat domain (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G131900 [exp] 1391 / 0 AT1G23180 820 / 0.0 ARM repeat superfamily protein (.1) Potri.007G051000 [exp] 57 / 6e-08 AT2G23140 1018 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.002G137100 [exp] 56 / 1e-07 AT2G44900 1300 / 0.0 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Potri.005G144700 [exp] 54 / 7e-07 AT2G23140 972 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Potri.014G046000 [exp] 53 / 9e-07 AT2G44900 1300 / 0.0 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Potri.001G238500 [exp] 53 / 1e-06 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.002G009900 [exp] 52 / 1e-06 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.005G180100 [exp] 52 / 2e-06 AT1G77460 2772 / 0.0 Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.1), Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.2) Potri.009G029600 [exp] 51 / 3e-06 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024899 [exp] 56 / 1e-07 AT2G23140 551 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10022919 [exp] 56 / 2e-07 AT2G23140 549 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10016016 [exp] 53 / 1e-06 AT5G42340 702 / 0.0 Plant U-Box 15 (.1) Lus10016565 [exp] 53 / 1e-06 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10042900 [exp] 52 / 2e-06 AT2G44900 1321 / 0.0 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Lus10028197 [exp] 52 / 2e-06 AT2G44900 1144 / 0.0 F-box Armadillo protein 1, ARABIDILLO-1 (.1) Lus10019308 [exp] 52 / 3e-06 AT2G23140 911 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10040834 [exp] 51 / 4e-06 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10011514 [exp] 50 / 6e-06 AT2G23140 916 / 0.0 RING/U-box superfamily protein with ARM repeat domain (.1.2) Lus10042730 [exp] 50 / 1e-05 AT1G77460 2385 / 0.0 Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.1), Armadillo/beta-catenin-like repeat ; C2 calcium/lipid-binding domain (CaLB) protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF05804 [poplar] [flax] KAP Kinesin-associated protein (KAP)
Representative CDS sequence Show only first row Show all	>Potri.010G110200.3 pacid=42799812 polypeptide=Potri.010G110200.3.p locus=Potri.010G110200 ID=Potri.010G110200.3.v4.1 annot-version=v4.1 ATGATGGCTTCAACAATCTCAGCTCAGCTCAACCTCAATTTCCCTTCTCTCCTTTACACTCCCTTCAATACCCTCTTGGAAGTTACCAGACCCACAAGAA GAAAATCATCACTCTCTTCCCATTTTCATATTAACTCCAACCCCAAATTGTGCTCCAACCGTACAGTGCTTACCAGGGTCTGTGGTGATGGCGGTGGAAG TGGTGCCATTGATGCCAGTCCGCAACAAAAGAAGATTGAGGAAACAAAAGGTAGCTCATCTAGTTTCGGTGATAGCTATGTGGCCTTGTTTGTTCGGATG CTTGGGCTAGATAACGATCCTCTTGATAGAGAACAGGCGATAGTGGCACTGTGGCAATATTCGCTCGGAGGAAAGAAGTGCATTGATAACATCATGCAGT TTCAGGGATGCATCAATCTCACTGTAAACCTTCTTCAGTCTGAATCTAGTTCTGCATGTGAAGCAGCTGCTGGTCTCCTACGATCAATATCTTCAGTTAA TGTATACAGAGACGTGGTAGCAGAAAGTGGAGCAATAGAAGAGATAACTGGTCTGCTCAGTCAACCTTCTTTGACTCCTGAGGTTATGGAGCAAAGTCTA TGTATTCTTTGGAACTTGTCTGTGGATGAGAAGCTCAGGGTGAAAATTGCTAACCCTGATATCCTGCCTTTACTGATTAAGTCCCTGGAAGATGAGGACT TGAGAGTGAAGGAAGCAGCAGGAGGAGTATTGGCAAATTTGACATTGACTCACTCCAACCACAAGATCATGGTGGAAGCGGGGGTTGTTCCTAAGTTGGC GGATTTCTTAAAATCTGCGGTTGAAGAAGAATCCAAGGTCATTAGGAAGGAAGCAAGAAATGCTCTGGTTGAACTTTCTAAGAATGAATACTATAGAATC CTTGTCATAGAGGAAGGTCTAGTGCCTGTACCATTAATTGGCATAGCTGCATATAGATCCTTTACTCCATCTTTGCTTTCATGGCCAAGCTTACCTGATG GTTCAAAAATTGAACGTACTTCTAAAGGTCCTTCAAGGTTTGGTGCTTCTGAATTGCTCCTCGGATTAAATATTGATGACAAGAACGCAAACCTTGAGGA AGCTAAGATGAATGCAATAATTGGACGGTCTAAGCAACAATTTCTTGCTCGTAGCGGGGCTATAGAAGTGGAAGACACAAAATTGCCTCAAAATGAATTA TCTAAAAATAGGAAATTTACACTTTTGCCATGGATGGATGGTGTGGCCAGATTGGTTTTAATTCTTGAACTTGAAGATGAGTCAGCCATTTGCAGAGCTG CAGAGTCAATTGCTGATGCATCTATCAATGAACATTTGCGAAATTCATTTAAGGAAGCTGGAGCAGTCAAGAATCTAATTCAGCTCTTGGACCATAACAA TGATGCTATCAGATTTGCGGCTGTTGGTGCTTTGGAGAGGTTATCTATCAGCAATGCGGTTTGTCAGACAATCGAAGCAGAAGGTGTTATGGCTCCCTTA ATTAAAATCTTAAAGAACTCAGAGACGTCTGAAGGCATGATGGAAAAGACCTTGAATTTACTGGCTCGAATCTTAGACCCTAATAGAAAAAAGAAATCAA AGTTTTATGATGGACCAGTTAATGGATTTAAAAAGGAACTGGATGCAGCAAGAGGCGATGATGATCCTACTGGATTAACTAGAAAAGTTTATGAAATGCC AGATTCAAAAAAAAATACCAGACAAGATGTGTTGGCCTTCGATGTTGTTGCTCGGCTAGTTGATATGCTAAAGCATCCATCCTTAGAGCTACAAAGAAAA GTAGCTTCTGTCCTAGAGTTTGTGGCAATCAGTGAGTCAATCATGGACACAATCATCTCAGCGAATATTGAATCTGGTCTGCTTGCTATCTTCCAACAAG TAGAATTGAATGATTTGGAATCTGATGTTGAGAGCCAGCAGACAGAAATACACGCCATTCAAGTTGAAGAAGTTGGTCTTGCTATATCTGCAGCTTCTCG GTTACTCACAAAACTTCTTGATTTGGAGCAGTTTCGGCGCGCTATAAACTCTGCCCATTTCACTAAATTGCTCCATAAAATCCTGAAATCGAACATTCCT CTTCGGTACAAAGATTGGGTTGCTGCTTGTCTTGTTAAAATCGACTCTTTGTATGGTCCTATTTCCATCCTGGAATTCGAGAATCCGATCGACATGGAAG TCACCCTTTACGAGAAGATACCAAGACTAATAGAGCAAATCAGATCTGCTTTCTCTCTAGAAGCACAAGAAGCTGCAGTTGTAGAACTCAACAGGATAAT TTCCGAGGGAATGGTAGATGCCACTCGAACTGTTGCTTCTGAAGGAGGAATATTTCCATTGGTGAAACTAATAGAGGGAGGAAGTGAGAAGGCCGTCGAA GCAGCCTTATCCATACTATATAATCTGAGCATGGACAGCGAAAATCATGCTGCAATTATAGCTGCTGGGGCAGTGCCACCCTTAAGAAGAATTATACTGT CAGAAAGGTCACAATGGAAACGAGCTTTGCGTTTGCTGAGGAACTTGCCTACATGA
AA sequence Show only first row Show all	>Potri.010G110200.3 pacid=42799812 polypeptide=Potri.010G110200.3.p locus=Potri.010G110200 ID=Potri.010G110200.3.v4.1 annot-version=v4.1 MMASTISAQLNLNFPSLLYTPFNTLLEVTRPTRRKSSLSSHFHINSNPKLCSNRTVLTRVCGDGGGSGAIDASPQQKKIEETKGSSSSFGDSYVALFVRM LGLDNDPLDREQAIVALWQYSLGGKKCIDNIMQFQGCINLTVNLLQSESSSACEAAAGLLRSISSVNVYRDVVAESGAIEEITGLLSQPSLTPEVMEQSL CILWNLSVDEKLRVKIANPDILPLLIKSLEDEDLRVKEAAGGVLANLTLTHSNHKIMVEAGVVPKLADFLKSAVEEESKVIRKEARNALVELSKNEYYRI LVIEEGLVPVPLIGIAAYRSFTPSLLSWPSLPDGSKIERTSKGPSRFGASELLLGLNIDDKNANLEEAKMNAIIGRSKQQFLARSGAIEVEDTKLPQNEL SKNRKFTLLPWMDGVARLVLILELEDESAICRAAESIADASINEHLRNSFKEAGAVKNLIQLLDHNNDAIRFAAVGALERLSISNAVCQTIEAEGVMAPL IKILKNSETSEGMMEKTLNLLARILDPNRKKKSKFYDGPVNGFKKELDAARGDDDPTGLTRKVYEMPDSKKNTRQDVLAFDVVARLVDMLKHPSLELQRK VASVLEFVAISESIMDTIISANIESGLLAIFQQVELNDLESDVESQQTEIHAIQVEEVGLAISAASRLLTKLLDLEQFRRAINSAHFTKLLHKILKSNIP LRYKDWVAACLVKIDSLYGPISILEFENPIDMEVTLYEKIPRLIEQIRSAFSLEAQEAAVVELNRIISEGMVDATRTVASEGGIFPLVKLIEGGSEKAVE AALSILYNLSMDSENHAAIIAAGAVPPLRRIILSERSQWKRALRLLRNLPT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G23180			ARM repeat superfamily protein...		Potri.010G110200 [exp]	0	1
AT2G28605			Photosystem II reaction center...		Potri.005G068500 [exp]	1.00	0.9271
AT4G37670		NAGS2	N-acetyl-l-glutamate synthase ...		Potri.014G005000 [exp]	3.46	0.9001
AT4G21065			Tetratricopeptide repeat (TPR)...		Potri.017G001000 [exp]	3.74	0.8660
AT5G13230			Tetratricopeptide repeat (TPR)...		Potri.003G164900 [exp]	4.00	0.8649
AT5G64580		EMB3144	EMBRYO DEFECTIVE 3144, AAA-typ...		Potri.005G059700 [exp]	4.24	0.8705
AT3G18840			Tetratricopeptide repeat (TPR)...		Potri.004G152000 [exp]	4.47	0.8720
AT4G34020		AtDJ1C	DJ-1 homolog C, Class I glutam...		Potri.009G100900 [exp]	5.47	0.9038
AT4G10180		FUS2, DET1, ATD...	FUSCA 2, DE-ETIOLATED 1, light...		Potri.013G161700 [exp]	10.00	0.8568	Pt-DET1.1
AT3G21740		APO4	ACCUMULATION OF PHOTOSYSTEM ON...		Potri.017G037200 [exp]	10.95	0.8523
AT5G48960			HAD-superfamily hydrolase, sub...		Potri.008G205900 [exp]	11.22	0.8454

Compare expression of checked genes

Potri.010G110200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.