Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70760 187 / 8e-61 NdhL, CRR23 NADH dehydrogenase-like complex L, CHLORORESPIRATORY REDUCTION 23, inorganic carbon transport protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012886 [exp] 191 / 7e-62 AT1G70760 189 / 4e-61 NADH dehydrogenase-like complex L, CHLORORESPIRATORY REDUCTION 23, inorganic carbon transport protein-related (.1) Lus10012887 [exp] 191 / 7e-62 AT1G70760 189 / 4e-61 NADH dehydrogenase-like complex L, CHLORORESPIRATORY REDUCTION 23, inorganic carbon transport protein-related (.1) Lus10030538 [exp] 187 / 3e-60 AT1G70760 191 / 6e-62 NADH dehydrogenase-like complex L, CHLORORESPIRATORY REDUCTION 23, inorganic carbon transport protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10716 [poplar] [flax] NdhL NADH dehydrogenase transmembrane subunit
Representative CDS sequence Show only first row Show all	>Potri.010G110400.1 pacid=42798149 polypeptide=Potri.010G110400.1.p locus=Potri.010G110400 ID=Potri.010G110400.1.v4.1 annot-version=v4.1 ATGAGCTATTGTTTCAGCTTCCAAAGCCCCAAGGCTTTGCCTACTCTCTCTTCTCAGCGCAGAAGAACTTCTCTGTGTACTACAGCTAAATACAAACCAT TCCACAATACCAAGCTTGTTAAGCAGAAAGCTACAAGCGTTAACAGAAAGCCTGAAGACCACGATCAAGCAAAGAAGTCTAGCCTGGCAATTCAGTTTGC TGCACTTTTAGCTACTATTGAGCAGCCAGCATTTGCCATCACTGGAGTGAATAATCCTGAAGATTTGACATCGATTTTGATACAATTGGCTATTGTTACC TTTTGTTACTTCATTCTGATGCCACCTATCATCTTCAACTGGCTTTGGAAAAGACTGTACAGGAGAAAGCTTTTGGAGACGTATTTGCAATTCATGTGCA TCTTCATTTTCTTTCCAGGGATATTGCTGTGGGCACCATTTCTGAACTTCAGGAAATTTCCTCGGGATCCATCCTTGCAGTACCCATGGTCCAAACCCGA AGATCCTTCAAAAATCAAGAACGATTATCTTAGGTACCCCTGGGCTACACCTGAAGATTATGATTAG
AA sequence Show only first row Show all	>Potri.010G110400.1 pacid=42798149 polypeptide=Potri.010G110400.1.p locus=Potri.010G110400 ID=Potri.010G110400.1.v4.1 annot-version=v4.1 MSYCFSFQSPKALPTLSSQRRRTSLCTTAKYKPFHNTKLVKQKATSVNRKPEDHDQAKKSSLAIQFAALLATIEQPAFAITGVNNPEDLTSILIQLAIVT FCYFILMPPIIFNWLWKRLYRRKLLETYLQFMCIFIFFPGILLWAPFLNFRKFPRDPSLQYPWSKPEDPSKIKNDYLRYPWATPEDYD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Potri.010G110400 [exp]	0	1
AT2G13360		SGAT, AGT1, AGT	L-serine:glyoxylate aminotrans...		Potri.009G047700 [exp]	1.00	0.9911
AT4G31530			NAD(P)-binding Rossmann-fold s...		Potri.001G253900 [exp]	2.00	0.9878
AT2G03420			unknown protein		Potri.010G161400 [exp]	3.00	0.9824
AT2G04700			ferredoxin thioredoxin reducta...		Potri.001G350900 [exp]	3.46	0.9836
AT5G20140			SOUL heme-binding family prote...		Potri.018G073501 [exp]	3.87	0.9873
AT5G61410		RPE, EMB2728	EMBRYO DEFECTIVE 2728, D-ribul...		Potri.015G062100 [exp]	4.47	0.9842
AT5G58330			lactate/malate dehydrogenase f...		Potri.008G031700 [exp]	4.47	0.9838
AT2G41040			S-adenosyl-L-methionine-depend...		Potri.006G060400 [exp]	5.29	0.9789
AT1G73885			unknown protein		Potri.015G054100 [exp]	8.83	0.9792
AT1G32060		PRK	phosphoribulokinase (.1)		Potri.003G099400 [exp]	8.94	0.9827

Compare expression of checked genes

Potri.010G110400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.