Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23170 527 / 0 Protein of unknown function DUF2359, transmembrane (.1.2) AT1G70770 518 / 2e-178 Protein of unknown function DUF2359, transmembrane (.1.2) AT3G11880 333 / 1e-108 Protein of unknown function DUF2359, transmembrane (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G131800 [exp] 634 / 0 AT1G23170 466 / 5e-161 Protein of unknown function DUF2359, transmembrane (.1.2) Potri.004G091100 [exp] 521 / 1e-179 AT1G23170 508 / 5e-174 Protein of unknown function DUF2359, transmembrane (.1.2) Potri.017G124300 [exp] 516 / 8e-178 AT1G23170 507 / 5e-174 Protein of unknown function DUF2359, transmembrane (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001593 [exp] 612 / 0 AT1G70770 615 / 0.0 Protein of unknown function DUF2359, transmembrane (.1.2) Lus10003709 [exp] 611 / 0 AT1G70770 614 / 0.0 Protein of unknown function DUF2359, transmembrane (.1.2) Lus10034590 [exp] 585 / 0 AT1G23170 616 / 0.0 Protein of unknown function DUF2359, transmembrane (.1.2) Lus10021774 [exp] 580 / 0 AT1G23170 584 / 0.0 Protein of unknown function DUF2359, transmembrane (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF10151 [poplar] [flax] TMEM214 TMEM214, C-terminal, caspase 4 activator
Representative CDS sequence Show only first row Show all	>Potri.010G110500.1 pacid=42797010 polypeptide=Potri.010G110500.1.p locus=Potri.010G110500 ID=Potri.010G110500.1.v4.1 annot-version=v4.1 ATGGATTCCTCTGAATCAAACGAAAATCACCAGATCGCCAGCAACAGCAACTCTCACTCAAACGCCAACGATCACGGCTGGCAAAAAGTCACTTACCCCA AGCGCCAGCGAAAGCAGAGATCCGCTGCAGATTCCGCCGCCAATAATTCTCATCCAATCGCCAATGACAGCAACAAGCCAAACAACGTCTTCCGATCTCT TGAGCTTCAATCCGAAGACCGCCGCCGTAAAATTCTCGAATCTCAGAGCGCCGCTGCTGATGCCGCCGCCGTTGTTGATACTCGATCGAGATCGAAGCAT CACCACCGATCCGATGACGACGACGACGACGATTACGAAAGCGATGATGCTGGAGTTTCCAAGGAGAATGCCAAGGCTGAAGAGAAGAAAGTGAAGCAGA AGAAGCCTAAGAAACCTAAAGTGACTGTAGCTGATGCCGCCGCTAAAATTGATGCCGCCGATCTTGCTGCCTTTCTCTCTGACATATCGGGGTCATATGA GGGTCAGCAGGAGATACTGTTGATGCGATTCGCGGATTATTTTGGGAGGGCTTTTTCGGCAGTGAATTCGTCGCAATTTCCTTGGGTTAAGATGTTCAGG GAGAATACTGTGGCCAAGCTCGCCGATATTCCACTGTCTCATATTTCTGATGCTGTTTATAAAACAGCCGCTGACTGGATTAACCAACTGTCCATTGCAG CGCTTGGTTCATTTGTACTATGGTGTTTAGACAGCATTCTTGCAGACTTGGCAAGCCAGCAAGGTGGTTCTAAAGGCTCTAAAAAGGGCATTCAGCAAGC ATCATCAAAATCTCAGGTCGCAATGTTTGTGGTTCTGGCAATGGTGTTGCGACGAAAACCTGATGCTTTGGTTAATGTATTGCCAACACTTAGGGAAAGT TCAAAGTATCAAGGACAGGACAAACTTGTGGTTATTGTATGGATGATAGCACAGGCCTCTCATGGTGATTTGGCAGTAGGATTGTACTCTTGGGGTCATA ACCTTCTGCCTATAGTGAGTGGCAAAAGCTCTAATCCACAGTCCAGGGATATAATTTTGCAGTCAGTGGAGAAAATTTTGGCTGCCCCGAAAGCTAGATC AATATTGGTAAATGGTGCTGTTAGAAAGGGGGAGCGCTTGCTGCCACCTTCTGCACTTGAAATACTGTTACGAGTTACCTTCCCTTCATCTTCAGCTAGA CTAAAGGCTACTGAAAGGTTTGGGGCAATCTATCCCACCCTAAAAGAGGTGGCTCTTGCCGGTGCTCCTAGAAGCAAAGCAATGAAACAAGTATCACAGC AGATACTGAGTTTTGCTCTAAAAGCAGCTGGAGAAAGCATTCCTGAGTTATCTAAGGAAGCAGCTGGCATTTCCATCTGGTGTTTGACCCAAAATGCTGA TTGTTATAAGCAATGGGATAAGGTTTACCAGGATAATCTAGAAGCTAGTGTTGCTGTTCTTAAAAGACTCTTGGAGGAATGGAAGGAGCTTTCAGTGAAA CTGGCTCCTCTTGATCCTATGAGGGAAACTATCAAGAACTATAGACAGAAGAATGAGAAAGGAATGGAACCTGAAGCTGATGCTACTCGTCAAGCACTCT TCAGGGAGGCAGATAAGCACTGCAAGACACTATCAAGAAAATTATCGCACGGCCATGGTTGCCTTAAAGGTATGGCTGTTGCTGTCATCGCATTGGCCGC TGGTGCTGCCATCATGTCATCAAACATGGAGTCCTGGGATTGGAAGGAGTTGCCTGTATTTATTAGCTCTCAATTCTCTTTCTAA
AA sequence Show only first row Show all	>Potri.010G110500.1 pacid=42797010 polypeptide=Potri.010G110500.1.p locus=Potri.010G110500 ID=Potri.010G110500.1.v4.1 annot-version=v4.1 MDSSESNENHQIASNSNSHSNANDHGWQKVTYPKRQRKQRSAADSAANNSHPIANDSNKPNNVFRSLELQSEDRRRKILESQSAAADAAAVVDTRSRSKH HHRSDDDDDDDYESDDAGVSKENAKAEEKKVKQKKPKKPKVTVADAAAKIDAADLAAFLSDISGSYEGQQEILLMRFADYFGRAFSAVNSSQFPWVKMFR ENTVAKLADIPLSHISDAVYKTAADWINQLSIAALGSFVLWCLDSILADLASQQGGSKGSKKGIQQASSKSQVAMFVVLAMVLRRKPDALVNVLPTLRES SKYQGQDKLVVIVWMIAQASHGDLAVGLYSWGHNLLPIVSGKSSNPQSRDIILQSVEKILAAPKARSILVNGAVRKGERLLPPSALEILLRVTFPSSSAR LKATERFGAIYPTLKEVALAGAPRSKAMKQVSQQILSFALKAAGESIPELSKEAAGISIWCLTQNADCYKQWDKVYQDNLEASVAVLKRLLEEWKELSVK LAPLDPMRETIKNYRQKNEKGMEPEADATRQALFREADKHCKTLSRKLSHGHGCLKGMAVAVIALAAGAAIMSSNMESWDWKELPVFISSQFSF

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G23170			Protein of unknown function DU...		Potri.010G110500 [exp]	0	1
AT5G57020		ATNMT1, NMT1	ARABIDOPSIS THALIANA MYRISTOYL...		Potri.018G066200 [exp]	1.41	0.8535	NMT1.5
AT2G47510		FUM1	fumarase 1 (.1.2)		Potri.002G201300 [exp]	10.58	0.8511	FUM1.1
AT5G07350		TSN1, AtTudor1	Arabidopsis thaliana TUDOR-SN ...		Potri.015G109300 [exp]	15.23	0.8082	Pt-SN4.1
AT2G37250		ADK, ATPADK1	adenosine kinase (.1)		Potri.010G215300 [exp]	18.97	0.7577
AT5G14600			S-adenosyl-L-methionine-depend...		Potri.018G120500 [exp]	19.74	0.7480
AT3G07100		AtSEC24A, SEC24...	ENDOPLASMIC RETICULUM MORPHOLO...		Potri.008G049700 [exp]	22.69	0.7348
AT2G40290			Eukaryotic translation initiat...		Potri.008G072500 [exp]	25.92	0.8327	ALPHA.7
AT4G24820			26S proteasome, regulatory sub...		Potri.015G090900 [exp]	26.73	0.8002
AT1G72810			Pyridoxal-5'-phosphate-depende...		Potri.001G199100 [exp]	29.59	0.6889
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Potri.017G092400 [exp]	30.65	0.8275

Compare expression of checked genes

Potri.010G110500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.