Plant FIBer expression Database

Potri.010G111200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G01505 45 / 4e-07 CLE16 CLAVATA3/ESR-RELATED 16 (.1)
AT1G70895 39 / 5e-05 CLE17 CLAVATA3/ESR-RELATED 17 (.1.2)
AT5G12235 39 / 7e-05 CLE22 CLAVATA3/ESR-RELATED 22 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G130800
[exp]
97 / 2e-27 AT2G01505 45 / 2e-07 CLAVATA3/ESR-RELATED 16 (.1)
Potri.001G274200
[exp]
37 / 0.0002 AT5G12235 / CLAVATA3/ESR-RELATED 22 (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.010G111200.1 pacid=42798194 polypeptide=Potri.010G111200.1.p locus=Potri.010G111200 ID=Potri.010G111200.1.v4.1 annot-version=v4.1
ATGGTATCTCACCATAAAGTTGGAGTAGAAGCAGCAAGAGCTAGAAGATATGCTGGGGCTGCTAGAGCTGCGATTATCTTCTTATTCTGGATTCTGTTAA
TTCTTGCTCAGTTAGGTGTCTTTTTAGTTGTTCATGAAGAAACTGATAAGCCGGTGAAATCCCTGCCAAGAAAAGCCAGGGTTTTTGAGACAGGGTCTGT
TCATGCATCTCCAAACCAAGATCAGCCTGTGAACATTGATGGAGGAGATCCAGACGCAGTATACGAAGACGATAAAAGGACAATTCACACAGGTCCTAAT
CCTCTTCACAACTAG
AA sequence
>Potri.010G111200.1 pacid=42798194 polypeptide=Potri.010G111200.1.p locus=Potri.010G111200 ID=Potri.010G111200.1.v4.1 annot-version=v4.1
MVSHHKVGVEAARARRYAGAARAAIIFLFWILLILAQLGVFLVVHEETDKPVKSLPRKARVFETGSVHASPNQDQPVNIDGGDPDAVYEDDKRTIHTGPN
PLHN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G01505 CLE16 CLAVATA3/ESR-RELATED 16 (.1) Potri.010G111200
[exp]
0 1
AT5G18080 SAUR24 small auxin up RNA 24, SAUR-li... Potri.004G165400
[exp]
2.00 0.9867
AT1G17860 Kunitz family trypsin and prot... Potri.004G067800
[exp]
3.87 0.9843 ACTI.3
AT5G11420 Protein of unknown function, D... Potri.006G250100
[exp]
4.89 0.9827
AT3G54420 ATCHITIV, CHIV,... CHITINASE CLASS IV, homolog of... Potri.019G094000
[exp]
5.09 0.9865
AT1G47960 ATC/VIF1, C/VIF... cell wall / vacuolar inhibitor... Potri.001G109700
[exp]
6.48 0.9862
AT3G22800 Leucine-rich repeat (LRR) fami... Potri.010G083100
[exp]
7.21 0.9859
AT5G02190 EMB24, ATASP38,... PROMOTION OF CELL SURVIVAL 1, ... Potri.006G087600
[exp]
7.61 0.9526
AT1G29670 GDSL-like Lipase/Acylhydrolase... Potri.013G115900
[exp]
9.00 0.9813
AT1G34640 peptidases (.1) Potri.002G096700
[exp]
12.40 0.9821
AT4G24340 Phosphorylase superfamily prot... Potri.013G082700
[exp]
13.26 0.9792

Potri.010G111200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.