Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01470 346 / 8e-117 ATSEC12, STL2P SEC12P-like 2 protein (.1) AT5G50650 343 / 8e-116 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50550 343 / 8e-116 Transducin/WD40 repeat-like superfamily protein (.1) AT3G52190 145 / 2e-39 AtPHF1, PHF1 phosphate transporter traffic facilitator1 (.1) AT2G37160 49 / 3e-06 Transducin/WD40 repeat-like superfamily protein (.1.2) AT3G53390 47 / 2e-05 Transducin/WD40 repeat-like superfamily protein (.1) AT1G61210 44 / 0.0002 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G08390 44 / 0.0002 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 44 / 0.0002 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G71840 43 / 0.0004 transducin family protein / WD-40 repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G130300 [exp] 594 / 0 AT2G01470 355 / 2e-120 SEC12P-like 2 protein (.1) Potri.010G232400 [exp] 158 / 2e-44 AT3G52190 511 / 0.0 phosphate transporter traffic facilitator1 (.1) Potri.008G029200 [exp] 155 / 3e-43 AT3G52190 489 / 2e-173 phosphate transporter traffic facilitator1 (.1) Potri.019G087200 [exp] 54 / 1e-07 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.011G156900 [exp] 53 / 3e-07 AT1G73720 948 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Potri.013G116900 [exp] 52 / 5e-07 AT1G71840 473 / 6e-167 transducin family protein / WD-40 repeat family protein (.1) Potri.001G305500 [exp] 49 / 3e-06 AT3G21060 757 / 0.0 RbBP5 LIKE, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G045800 [exp] 48 / 1e-05 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.012G065200 [exp] 46 / 5e-05 AT3G42660 1107 / 0.0 transducin family protein / WD-40 repeat family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035728 [exp] 473 / 2e-166 AT2G01470 332 / 3e-111 SEC12P-like 2 protein (.1) Lus10037313 [exp] 467 / 8e-164 AT2G01470 328 / 2e-109 SEC12P-like 2 protein (.1) Lus10017451 [exp] 152 / 5e-42 AT3G52190 516 / 0.0 phosphate transporter traffic facilitator1 (.1) Lus10037923 [exp] 151 / 2e-41 AT3G52190 497 / 2e-176 phosphate transporter traffic facilitator1 (.1) Lus10028830 [exp] 145 / 3e-39 AT3G52190 518 / 0.0 phosphate transporter traffic facilitator1 (.1) Lus10038651 [exp] 140 / 1e-37 AT3G52190 484 / 2e-171 phosphate transporter traffic facilitator1 (.1) Lus10033710 [exp] 56 / 5e-08 AT1G71840 489 / 2e-166 transducin family protein / WD-40 repeat family protein (.1) Lus10031629 [exp] 52 / 5e-07 AT1G71840 488 / 2e-172 transducin family protein / WD-40 repeat family protein (.1) Lus10000150 [exp] 49 / 2e-06 AT3G53390 434 / 3e-151 Transducin/WD40 repeat-like superfamily protein (.1) Lus10026500 [exp] 49 / 5e-06 AT3G53390 785 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G111800.2 pacid=42796835 polypeptide=Potri.010G111800.2.p locus=Potri.010G111800 ID=Potri.010G111800.2.v4.1 annot-version=v4.1 ATGGGAAAGAGCAGAGAGGCAGATCCTCAAAGCCTGCAAAAATACGGCGTTCCTTTATACTCTGCTGCTTGGCTTCCTTACAAAGAGCTCAGATCCAAGC TACAACCCCGTGACGATCACGTTGATTCCTCTAAACAACAGGAACAACAGCAAGAGGAGGAGGAGGAGATCCCCAAGCCCTCTGCTTCTTCCCATGAACA CTACGTCGTTTTGGCCGGCGGTGGCGGTGAAGGCAGCAGCGGCATTCCCAACGCCGTCCTTCTCTCCTGTTTTGATTTCTCCTCCAATTCCCTCGCTTCT CAGCCCGTAGCTAAGCTTGGTCTTGGTTCTCAATTACCCTATAGAATGGTGGTTCACCCCGGTGGAGATGGAGTCATTTGTGCATTCCCCAGTAGTTGCC GATTTTTTGACTGGGATGAAGTCAAGGACAATGAAGACCATAAATTGGGCCTTAAACCATCCAAAAAAGTACTGACACAATTAGAAGATGTTGGACAGCA ATTAGCATTGGCCTTTAACAGTGACAGCTCTGTACTTGCTGTAGGGGGCGAGGATGGCAATTTAAGGGTTTTCAAGTGGCCTGGCATGGAAATTATTCTT AATGAGACTCAAGCCCATGCATCTTTAAAGGACTTGTGTTTCAGCCCTGATGGAAAATTTCTTGTTTCAATGGGACAGCGTGACCTTGGTAGAGTCTGGG ATGTAACTTCATCCACAGCTGTAGCCTCTTTACCAAAGGAAAACGATGAGATTTTTGCATCGTGCAGATTTTCTCAAAGGAGTGATCAGGCTCAGGTTCT CTATATCGCTGCAATAACAGACAAAGGTTCAAGTATTGTGACTTGGAACACAAGCTCATGGAAGAGAATGAGCTCAAAGCATGTAGCCCGTGAACCAGTT TCATCCTTCAATGTCTCACCTGATGGAAAGCTTCTTGCAATGGGTATGACTCAAGGAGATGTGTTGCTTGTAAATTCAACCAACTTGCGTGTTCAAACAC TAGTTAGGAAAGCACATCTTGGCATAGTAACTGCATTGGCGTTCTCTCATGATTCAAGGGCTTTGGTCTCTGCCTCTATGGACTCAAGTGCAAGGGTGAC ACTAATTGAGGACAACAGAAGTGCTGCAGGGGGATCAAGCATGCAGATCATTATATTCATCATTATACTTGCAATTGCTGCATATTTCTTGAAGAATGAA GTTCTTCCTTTTCTTGTCTAG
AA sequence Show only first row Show all	>Potri.010G111800.2 pacid=42796835 polypeptide=Potri.010G111800.2.p locus=Potri.010G111800 ID=Potri.010G111800.2.v4.1 annot-version=v4.1 MGKSREADPQSLQKYGVPLYSAAWLPYKELRSKLQPRDDHVDSSKQQEQQQEEEEEIPKPSASSHEHYVVLAGGGGEGSSGIPNAVLLSCFDFSSNSLAS QPVAKLGLGSQLPYRMVVHPGGDGVICAFPSSCRFFDWDEVKDNEDHKLGLKPSKKVLTQLEDVGQQLALAFNSDSSVLAVGGEDGNLRVFKWPGMEIIL NETQAHASLKDLCFSPDGKFLVSMGQRDLGRVWDVTSSTAVASLPKENDEIFASCRFSQRSDQAQVLYIAAITDKGSSIVTWNTSSWKRMSSKHVAREPV SSFNVSPDGKLLAMGMTQGDVLLVNSTNLRVQTLVRKAHLGIVTALAFSHDSRALVSASMDSSARVTLIEDNRSAAGGSSMQIIIFIIILAIAAYFLKNE VLPFLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01470		ATSEC12, STL2P	SEC12P-like 2 protein (.1)		Potri.010G111800 [exp]	0	1
AT4G40042			Microsomal signal peptidase 12...		Potri.010G059300 [exp]	3.74	0.6872
AT1G71990		ATFT4, ATFUT13,...	ARABIDOPSIS FUCOSYLTRANSFERASE...		Potri.019G082200 [exp]	7.48	0.5651
AT4G19210		ABCE2, ATRLI2	ARABIDOPSIS THALIANA RNASE L I...		Potri.004G235900 [exp]	19.69	0.6724	Pt-ATRLI1.1
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Potri.005G146700 [exp]	19.97	0.6721	Pt-XF1.2
AT2G31305		INH3	inhibitor-3 (.1)		Potri.007G101900 [exp]	24.85	0.6303
AT3G11830			TCP-1/cpn60 chaperonin family ...		Potri.004G195300 [exp]	29.91	0.6326
AT1G72280		AERO1	endoplasmic reticulum oxidored...		Potri.001G436100 [exp]	39.49	0.5887	Pt-AERO1.1
AT1G12300			Tetratricopeptide repeat (TPR)...		Potri.017G133501 [exp]	41.35	0.5576
AT4G00026		SD3	SEGREGATION DISTORTION 3, unkn...		Potri.002G140700 [exp]	43.63	0.5888
AT1G28510			Optic atrophy 3 protein (OPA3)...		Potri.011G059800 [exp]	43.63	0.5868

Compare expression of checked genes

Potri.010G111800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.