Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01460 1325 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT1G26190 195 / 3e-52 Phosphoribulokinase / Uridine kinase family (.1) AT1G73980 186 / 2e-49 Phosphoribulokinase / Uridine kinase family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G130200 [exp] 1529 / 0 AT2G01460 1337 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.010G134400 [exp] 180 / 2e-47 AT1G26190 968 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.008G110500 [exp] 179 / 6e-47 AT1G26190 933 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Potri.015G055400 [exp] 179 / 7e-47 AT1G73980 953 / 0.0 Phosphoribulokinase / Uridine kinase family (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027063 [exp] 1348 / 0 AT2G01460 1457 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10025598 [exp] 1308 / 0 AT2G01460 1419 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10030570 [exp] 184 / 2e-48 AT1G26190 1018 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10009678 [exp] 182 / 7e-48 AT1G73980 962 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10009040 [exp] 181 / 1e-47 AT1G73980 971 / 0.0 Phosphoribulokinase / Uridine kinase family (.1) Lus10030919 [exp] 171 / 4e-44 AT1G26190 1007 / 0.0 Phosphoribulokinase / Uridine kinase family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00485 [poplar] [flax] PRK Phosphoribulokinase / Uridine kinase family
Representative CDS sequence Show only first row Show all	>Potri.010G111900.1 pacid=42797836 polypeptide=Potri.010G111900.1.p locus=Potri.010G111900 ID=Potri.010G111900.1.v4.1 annot-version=v4.1 ATGGACCATGAGGTTGTTCAGCGAGTATTCCAAGAAGGAGGCCGCGATTACTTCCAGCAACAGCCTCCTACTTCCTCCTCCTCCTCCTCCTCCTCCATCC TCCAATCTCTCCCTCTTCACGTGTCTTTTGATCATGGATATTATTTATTGGTAAAATCTATTCAAGAGCTCAGAGAGAAAAAAGAAGGTCTTGTTACTGT TGGCATTGGTGGTCCTAGTGGTTCAGGCAAAACAAGCTTAGCAGAGAAGGTGGCTTCTGTAATTGGTTGTGTTGTTATATCAATGGAGAATTATCGCATG GGATTTGATGATGGGAGTGATTTGGATTCAATTGATTTCGATGCACTGATACAAAATCTTGAGGATTTGACCAAAGGAAAAGATACTTTGACACCAATGT TTGATTACCAACAGAAAAGACGTATTGGTTCCAAAGGAATAAAGAGCGCATCATCTGGAGTGGTAGTAATTGATGGTGCCTATGCTCTGCATGCAAGACT GCGCTCCTTACTGGATATCCGGGTTGCTGTGGTTGGCGGAGTTCATTTCAGTCTTCTTTCTAAAGTTCAATACGACATTGGGGATTCTTGTTCATTGGAT TACCTTATTGACAGCATATTCCCACTGTTTAGGAAACACATTGAGCCAGACCTTCACCATGCACAGATTAGAATAAACAACAGCTTTGTCTCATCATTTA GAGAAGCAATCTACAAGCTGAAATGTAGAAGTGAGTCACCAGATGGACATCCTGCTTATGCCTTCCAAGGAACAGCACATACAGATAATTTTATTGAGAT GTACCTTAGGCCTCCTTCAGCAAGTGAAGAAGCACTGACAAATGATTGGATCAAGGTGCGGCAGTCTGGCATCAAATATTATCTATCACTTGGGGACCAG AGAATTGTTGACAAAAATTTTATTATCAGGCCAAAAGCTGAGTTTGAGGTTGGGAGAATGACACTTGGTGGGTTGCTGGCTTTAGGGTACAATGTTGTAG TGAGTTATAAACGGGCATCTTCATCTGTTAGCAATGGAAATCTTTCACTGTCGTTAGAGACCATCGATACTCTTGGTGAGACATTCGTGGTGCTGAGGGG CATGAATAGGAAAACTGTTGGAGCAGAGGCAACGAGGATGGGTGTTAATGGACCTTGGATCACCAAGTCATATCTGGAAATGATTCTTCAGAGAAAAGGT GTACCACGTCTTAACACACCACCACTATTGCCTAATACTTCAATGACAAGCAATCAAGAAAGGGTCATTGTTGCCCCAAGGCCAATCCGTACCTCTCCAA ACCTTGTTAATCGGCTTGAGGATTTATCTCAACCATGGACTCGGTCTCCAACAAAATCTAAAATGGAGCCTATAGTAGCAACATGGCATTTTATATCATC AGATACGTCACATGGGAGTTCAGTCATAGATTCTTCCTCTTTCAGGGATAACATGAAGATTGCTCCTATGCCTGATTCATATGATTTGGATAGAGGGTTG CTTCTTGCTGTTCAAGCAATACAGGCTTTGTTGGAGAATAAAGGCCCCCCTGTCATTGTTGGAATTGGAGGCCCAAGTGGATCCGGAAAAACTAGTCTGG CCCACAAAATGGCTAACATTGTTGGGTGCGAAGTAGTTTCCCTTGAAAGCTATTTTAAATCTGAACAAGTGAAAGATTTTAAGTATGACGACTTTAGCTC TCTAGATCTGTCTTTGCTTTCAAAGAATATCGGTAACATAAGGAATGGTAGAAGAACAAAAGTACCCATGTTTGATTTGGAGACTGGTGCTCGTAGTGGA TTTAAAGAACTTGAAGTTTCTGAAGATTGCGGCGTGATCATTTTTGAAGGGGTGTATGCTCTGCATCCTGAAATCCGAAAATCACTTGACCTGTGGATTG CTGTTGTTGGTGGTGTGCATTCACATCTTATTTCTCGAGTTCAAAGGGATAAAAGTAGAGTGGGGTGTTTTATGTCCCAAAATGATATCATGATGACAGT GTTTCCAATTTTTCAGCAGCATATTGAGCCGCATCTTGTTCATGCGCATCTCAAAATTCGAAATGACTTTGATCCTGTTCTTTCCCCTGAGAGTTCTTTG TTTGTTTTGAAGAGTAATAAGCAAGTGGCTTCTCAAGATATTTTGAAAATCTTAGATCCTGTGAAGTTGTGCAGTTTTGTTCAGAATTTCATTGATATAT ATTTAAGGCTACCTGGACTTCCTACAAATGGGCAGCTGGCAGAGAGCGACTGCATACGATTCAGAATCTGTGAGGGTAGATTTGCATTGTTGATTCGAGA GCCTATAAGAGAAGGGAATTTCATTATTCAACCAAAAGTGGATTTTGATATCAGCACCAGCACGGTCGCTGGCCTTCTTAACCTTGGGTATCAAGCTGTA GCATGCATTGAAGCATCTGCATATATCTACCAAGATGGAAAGATTCTCATTGAGGTTGATCATCTGCAAGACACCCCTAGTCCTTACTTACAGATCAAAG GGGTTAATAAGGAAGCTGTGGCGGCAGCTGGTTCAACACTTAAACTGGATGGTTCATATACAACTAAGAGTTATCTGCAGATCATTTTGGAAAGATTACC AGCAATGCAAAGAAGTTACAGTGGAATTCATGCTCAACAAGCTGCAAGGTTGCAGGAACTTGTTGAATTTATACAATCTCAGGGAAGCAGCTCAGCTTCA GAATCCTCTCCAGGTAGGGACGCTGCTCCTTTAGAAGGGGTAATTGAGGACATGCAGGCTAGAATCAAAAGGCTGGAAAGATGGCATGCTATCAACACGG TGCTATGGACTTTTCTGATGTCTGCCCTTGTTGGTTATTCGCTTTACCAAAGGAAGCACCAATGA
AA sequence Show only first row Show all	>Potri.010G111900.1 pacid=42797836 polypeptide=Potri.010G111900.1.p locus=Potri.010G111900 ID=Potri.010G111900.1.v4.1 annot-version=v4.1 MDHEVVQRVFQEGGRDYFQQQPPTSSSSSSSSILQSLPLHVSFDHGYYLLVKSIQELREKKEGLVTVGIGGPSGSGKTSLAEKVASVIGCVVISMENYRM GFDDGSDLDSIDFDALIQNLEDLTKGKDTLTPMFDYQQKRRIGSKGIKSASSGVVVIDGAYALHARLRSLLDIRVAVVGGVHFSLLSKVQYDIGDSCSLD YLIDSIFPLFRKHIEPDLHHAQIRINNSFVSSFREAIYKLKCRSESPDGHPAYAFQGTAHTDNFIEMYLRPPSASEEALTNDWIKVRQSGIKYYLSLGDQ RIVDKNFIIRPKAEFEVGRMTLGGLLALGYNVVVSYKRASSSVSNGNLSLSLETIDTLGETFVVLRGMNRKTVGAEATRMGVNGPWITKSYLEMILQRKG VPRLNTPPLLPNTSMTSNQERVIVAPRPIRTSPNLVNRLEDLSQPWTRSPTKSKMEPIVATWHFISSDTSHGSSVIDSSSFRDNMKIAPMPDSYDLDRGL LLAVQAIQALLENKGPPVIVGIGGPSGSGKTSLAHKMANIVGCEVVSLESYFKSEQVKDFKYDDFSSLDLSLLSKNIGNIRNGRRTKVPMFDLETGARSG FKELEVSEDCGVIIFEGVYALHPEIRKSLDLWIAVVGGVHSHLISRVQRDKSRVGCFMSQNDIMMTVFPIFQQHIEPHLVHAHLKIRNDFDPVLSPESSL FVLKSNKQVASQDILKILDPVKLCSFVQNFIDIYLRLPGLPTNGQLAESDCIRFRICEGRFALLIREPIREGNFIIQPKVDFDISTSTVAGLLNLGYQAV ACIEASAYIYQDGKILIEVDHLQDTPSPYLQIKGVNKEAVAAAGSTLKLDGSYTTKSYLQIILERLPAMQRSYSGIHAQQAARLQELVEFIQSQGSSSAS ESSPGRDAAPLEGVIEDMQARIKRLERWHAINTVLWTFLMSALVGYSLYQRKHQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01460			P-loop containing nucleoside t...		Potri.010G111900 [exp]	0	1
AT5G24620			Pathogenesis-related thaumatin...		Potri.015G000800 [exp]	6.32	0.8117
AT2G43490			Ypt/Rab-GAP domain of gyp1p su...		Potri.017G023200 [exp]	6.63	0.8212
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Potri.016G000400 [exp]	10.58	0.7952	RAB11.7
					Potri.004G104301 [exp]	10.81	0.7715
					Potri.006G225133 [exp]	13.03	0.8173
AT2G20210			RNI-like superfamily protein (...		Potri.014G194800 [exp]	13.07	0.7836
AT4G22120			ERD (early-responsive to dehyd...		Potri.011G009801 [exp]	13.07	0.7648
AT2G25910			3'-5' exonuclease domain-conta...		Potri.018G058900 [exp]	13.74	0.7502
AT5G36930			Disease resistance protein (TI...		Potri.002G056100 [exp]	14.69	0.7650
AT5G52520		PRORS1, OVA6	PROLYL-TRNA SYNTHETASE 1, OVUL...		Potri.004G078932 [exp]	17.54	0.7559

Compare expression of checked genes

Potri.010G111900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.