Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73670 687 / 0 ATMPK15 MAP kinase 15 (.1) AT2G01450 673 / 0 ATMPK17 MAP kinase 17 (.1.2.3.4) AT3G18040 672 / 0 ATMPK9 MAP kinase 9 (.1.2) AT5G19010 651 / 0 ATMPK16 mitogen-activated protein kinase 16 (.1) AT1G18150 650 / 0 ATMPK8 Protein kinase superfamily protein (.1.2.3) AT2G42880 626 / 0 ATMPK20 MAP kinase 20 (.1) AT3G14720 607 / 0 ATMPK19 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) AT1G53510 595 / 0 ATMPK18 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) AT4G01370 318 / 7e-105 ATMPK4 MAP kinase 4 (.1) AT3G45640 314 / 1e-103 ATMAPK3, ATMPK3 mitogen-activated protein kinase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G130000 [exp] 922 / 0 AT1G73670 697 / 0.0 MAP kinase 15 (.1) Potri.015G040300 [exp] 698 / 0 AT3G18040 767 / 0.0 MAP kinase 9 (.1.2) Potri.012G048600 [exp] 692 / 0 AT3G18040 793 / 0.0 MAP kinase 9 (.1.2) Potri.010G029700 [exp] 657 / 0 AT5G19010 921 / 0.0 mitogen-activated protein kinase 16 (.1) Potri.008G200800 [exp] 655 / 0 AT5G19010 922 / 0.0 mitogen-activated protein kinase 16 (.1) Potri.011G102500 [exp] 632 / 0 AT3G14720 874 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1) Potri.002G059900 [exp] 630 / 0 AT2G42880 897 / 0.0 MAP kinase 20 (.1) Potri.005G201800 [exp] 628 / 0 AT2G42880 904 / 0.0 MAP kinase 20 (.1) Potri.001G381300 [exp] 612 / 0 AT3G14720 875 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 19, MAP kinase 19 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021784 [exp] 771 / 0 AT1G73670 706 / 0.0 MAP kinase 15 (.1) Lus10038956 [exp] 667 / 0 AT3G18040 817 / 0.0 MAP kinase 9 (.1.2) Lus10034601 [exp] 666 / 0 AT1G73670 597 / 0.0 MAP kinase 15 (.1) Lus10041234 [exp] 641 / 0 AT5G19010 911 / 0.0 mitogen-activated protein kinase 16 (.1) Lus10021945 [exp] 634 / 0 AT5G19010 912 / 0.0 mitogen-activated protein kinase 16 (.1) Lus10027248 [exp] 617 / 0 AT3G18040 741 / 0.0 MAP kinase 9 (.1.2) Lus10005568 [exp] 614 / 0 AT1G53510 853 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) Lus10013702 [exp] 613 / 0 AT1G53510 845 / 0.0 ARABIDOPSIS THALIANA MAP KINASE 18, mitogen-activated protein kinase 18 (.1) Lus10018127 [exp] 322 / 1e-106 AT3G45640 652 / 0.0 mitogen-activated protein kinase 3 (.1) Lus10008339 [exp] 322 / 7e-106 AT2G43790 691 / 0.0 MAP kinase 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.010G112200.10 pacid=42799639 polypeptide=Potri.010G112200.10.p locus=Potri.010G112200 ID=Potri.010G112200.10.v4.1 annot-version=v4.1 ATGCTTGACAGAGATTTTTTCACCGAGTATGGAGAAGCAAGCCAGTATGAAATTCAAGAAGTAGTCGGGAAAGGAAGCTATGGCGTTGTCGCATCCGCCA TAGATACTCACACGGGAGAGAGGGTTGCTATCAAGAAGATGAACAATGTCTTTGAGCATGTCTCTGATGCTACTCGGATTCTACGTGAGATCAAGCTGCT TCGGCTGCTTAAACACGCTGATATCGTAGAAATCAAACATATTATGCTCCCTCCTTCTCCAAGAGAGTTTAAAGATGTTTATGTTGTGTTTGAGTTGATG GAATCTGACCTTCATCAAGTTATCAAGTTAAATGACGATCTCACTCCTGAACATCATCAGTTTTTCCTGTACCAGCTTCTTCGCGGTCTCAAATATATAC ATACAGGAAATGTGTTTCATCGAGATTTGAAGCCCAAAAATATTCTGGCTAATGCAGATTGTAAAGTAAAGCTTTGTGATTTTGGGCTGGCTCGTGTGTC ATTTACTAATGCTCCTTCTGCTATTTTTTGGACTGATTATGTGGCAACTAGATGGTACCGTGCCCCTGAACTCTGCGGCTCGTTTTCCTCCAAGTACACT CCTGCCATTGATATTTGGAGCATAGGATGCATATTTGCAGAGTTGTTGACGGGGAAACCTTTATTTCCTGGAAAAAATGTGGTGCATCAATTAGAACTCA TAACTGATTTGCTTGGCACTCCTGCTGCTGATACAATTGCACGAGTTGGGAATGAAAAAGCTAGGAAGTATTTGAGTAGCATGAGGAAAAAGCAGCCAAT TCCTTTCTCTAAAAAATTTCCAGATGTAGACCGATCAGCTTTGTGTATACTTGAGCGGTTGCTGGCATTTGATCCTAAAGACCGTCCATCTGCTGAAGAG GCTTTAGCTGATCTGTATTTTGACGGGCTGGCAGATAAGGAGCAAGAACCTTCAAGACAACCCATTTCAAAACTTGAGTTTGAATTTGAAAGGAGGAAAT TGACAAGAGATGATGTGAGAGAGCTAATTTACAGAGAGATTTTGGAGTATCATCCAGAGATGCTGAAGGAGTACCTTCAGGGCACAGATCAGACTCACTT TGTGTATCCAAGTGGAGTTGATCGATTTAAGGAACAATTTGCTCATCTTGAGGAAGGAGATGGTAAAAGTGATAGAAACAGCCCCCACCACAGGAAGCAT GCGACGTCCTTGCCTAGGGAGCGAATCTGCACAGCCGATGAAACCGAGAATACTGTAAAGCGCAGTACATCTTCTCTTTCTCGTGCAGCTAAGCAGAGCC CCCAAAAGTCGGAAGCTACTGAAGAACTACAATCTGCTAACCGAAATGCTGTAGCCATGCAGACCAGCTCTACCAAACCCAAGTGTAGCCCACGTACTCT GTTGAGAAGCGACAGCATTTGCGCTTCAACATCTGTGGGACTAATTGGAAATGATCGCCAGGTACATGCTCTCTGA
AA sequence Show only first row Show all	>Potri.010G112200.10 pacid=42799639 polypeptide=Potri.010G112200.10.p locus=Potri.010G112200 ID=Potri.010G112200.10.v4.1 annot-version=v4.1 MLDRDFFTEYGEASQYEIQEVVGKGSYGVVASAIDTHTGERVAIKKMNNVFEHVSDATRILREIKLLRLLKHADIVEIKHIMLPPSPREFKDVYVVFELM ESDLHQVIKLNDDLTPEHHQFFLYQLLRGLKYIHTGNVFHRDLKPKNILANADCKVKLCDFGLARVSFTNAPSAIFWTDYVATRWYRAPELCGSFSSKYT PAIDIWSIGCIFAELLTGKPLFPGKNVVHQLELITDLLGTPAADTIARVGNEKARKYLSSMRKKQPIPFSKKFPDVDRSALCILERLLAFDPKDRPSAEE ALADLYFDGLADKEQEPSRQPISKLEFEFERRKLTRDDVRELIYREILEYHPEMLKEYLQGTDQTHFVYPSGVDRFKEQFAHLEEGDGKSDRNSPHHRKH ATSLPRERICTADETENTVKRSTSSLSRAAKQSPQKSEATEELQSANRNAVAMQTSSTKPKCSPRTLLRSDSICASTSVGLIGNDRQVHAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73670		ATMPK15	MAP kinase 15 (.1)		Potri.010G112200 [exp]	0	1
AT5G24850		CRY3	cryptochrome 3 (.1)		Potri.006G277500 [exp]	4.69	0.9134
					Potri.010G144600 [exp]	5.29	0.8775
AT5G13150		ATEXO70C1	exocyst subunit exo70 family p...		Potri.001G060700 [exp]	6.78	0.8890
AT5G57660	CO	COL5, ATCOL5	CONSTANS-like 5 (.1)		Potri.018G096084 [exp]	8.83	0.8376
AT4G38660			Pathogenesis-related thaumatin...		Potri.005G112600 [exp]	11.40	0.8635
AT2G36290			alpha/beta-Hydrolases superfam...		Potri.008G021400 [exp]	12.00	0.8515
AT3G02380	CO	ATCOL2, COL2	CONSTANS-like 2 (.1)		Potri.017G107500 [exp]	15.42	0.8728
AT5G25830	GATA	GATA12	GATA transcription factor 12 (...		Potri.013G059600 [exp]	16.09	0.8259
AT1G26320			Zinc-binding dehydrogenase fam...		Potri.007G143800 [exp]	17.54	0.8214
AT3G02380	CO	ATCOL2, COL2	CONSTANS-like 2 (.1)		Potri.004G108320 [exp]	18.76	0.8455

Compare expression of checked genes

Potri.010G112200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.