Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01440 1177 / 0 DEAD/DEAH box RNA helicase family protein (.1) AT3G02060 198 / 2e-52 DEAD/DEAH box helicase, putative (.1.2) AT3G22330 49 / 3e-05 ATRH53, PMH2 putative mitochondrial RNA helicase 2 (.1) AT1G54270 47 / 4e-05 EIF4A-2 eif4a-2 (.1.2) AT3G22310 47 / 0.0001 ATRH9, PMH1 RNA HELICASE 9, putative mitochondrial RNA helicase 1 (.1) AT3G61240 46 / 0.0001 DEA(D/H)-box RNA helicase family protein (.1), DEA(D/H)-box RNA helicase family protein (.2) AT1G72730 46 / 0.0001 DEA(D/H)-box RNA helicase family protein (.1) AT3G13920 45 / 0.0001 RH4, TIF4A1, EIF4A1 eukaryotic translation initiation factor 4A1 (.1.2.3.4) AT2G45810 45 / 0.0002 DEA(D/H)-box RNA helicase family protein (.1) AT3G19760 44 / 0.0004 EIF4A-III eukaryotic initiation factor 4A-III (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G145000 [exp] 189 / 2e-49 AT3G02060 1254 / 0.0 DEAD/DEAH box helicase, putative (.1.2) Potri.002G237400 [exp] 184 / 7e-48 AT3G02060 1270 / 0.0 DEAD/DEAH box helicase, putative (.1.2) Potri.016G023100 [exp] 49 / 2e-05 AT3G22330 648 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.006G024100 [exp] 47 / 5e-05 AT3G22330 654 / 0.0 putative mitochondrial RNA helicase 2 (.1) Potri.001G197900 [exp] 46 / 0.0001 AT3G13920 786 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.018G061050 [exp] 45 / 0.0002 AT3G13920 793 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.006G225700 [exp] 45 / 0.0002 AT3G13920 797 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.003G043700 [exp] 45 / 0.0002 AT3G13920 791 / 0.0 eukaryotic translation initiation factor 4A1 (.1.2.3.4) Potri.002G003600 [exp] 45 / 0.0004 AT1G20920 1201 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034589 [exp] 782 / 0 AT2G01440 769 / 0.0 DEAD/DEAH box RNA helicase family protein (.1) Lus10034586 [exp] 354 / 1e-106 AT1G14780 567 / 0.0 MAC/Perforin domain-containing protein (.1) Lus10012587 [exp] 191 / 4e-50 AT3G02060 1231 / 0.0 DEAD/DEAH box helicase, putative (.1.2) Lus10041506 [exp] 191 / 7e-50 AT3G02060 1230 / 0.0 DEAD/DEAH box helicase, putative (.1.2) Lus10040975 [exp] 46 / 0.0001 AT3G19760 494 / 1e-176 eukaryotic initiation factor 4A-III (.1) Lus10017407 [exp] 45 / 0.0002 AT3G19760 728 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10035410 [exp] 45 / 0.0002 AT3G22330 692 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10010206 [exp] 45 / 0.0002 AT3G19760 717 / 0.0 eukaryotic initiation factor 4A-III (.1) Lus10031012 [exp] 45 / 0.0005 AT3G22330 690 / 0.0 putative mitochondrial RNA helicase 2 (.1) Lus10027268 [exp] 44 / 0.0007 AT3G22330 632 / 0.0 putative mitochondrial RNA helicase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00270 [poplar] [flax] DEAD DEAD/DEAH box helicase CL0023 [poplar] [flax] P-loop_NTPase PF00271 [poplar] [flax] Helicase_C Helicase conserved C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.010G112500.1 pacid=42797963 polypeptide=Potri.010G112500.1.p locus=Potri.010G112500 ID=Potri.010G112500.1.v4.1 annot-version=v4.1 ATGGCACCGACTCTATCGGCTATGGGATCGTTTCGTATTTGTTGTAGTGGAAAATGGCCGACGACTATAGTTTTCTTTAAAGCTGAGAGAGGGTATCGAA GTGCTTTGAGTAGAAATATGAGGTTTAATAATTTCGTCTTCAGGATATCAAAATTTCCTTCTTGTTCGAAGCATACATTTGTGGAAAGGTTGTTTAAACA AGCAGGCAAGCATGGCGAACAAAGTATATCAAATCGGTCAAAATTGCTTAATAGGGTCCAAGCGCTCATGGATTATGATGGTTTTCATGATTTAATCGAG AATGAAACAGCTGCAAAACAATTTAGAGGGAATGCCAAAGATGATACAGATGATTTTGATGTCTCCTTGGCCTGTAAAAGATTTCCATCCATTGTCTTGG GTAGTTCTCCTCCAGTGGAACTGTATGATGAGTCTGAAATTAACAGCCTTCTAGCAGCTAAAATTCTGGAAGGATTTCTTCCAAATGCTATGGGTGTGAA ATGTGTTGATCCAGATACTCTTCATGAACAGTTGACTTCTCCACACACTGAAAATGTGAACTCTTCCATGCCAAAAGAATTAAGAGGTGAAAGCTCATAC ATATTAAGTGAATTCAGGGAAGAAAATACATATACATCAAAAGAAATAAAAGAAGAAAATCTTCACAGTTTGCCTTTATATTCTCCGGACATGACGTTGG AAACTGAAGAAAAAATAGTTCCTAAAATTGGCATGGAAGAATACACTACCAAAGTGGAGCTTGAATCACAAGTAAATCTTGCATATCTTGATAAACCTAT CAGTTGCTTACCTGGGTTAAGTACTAGGCAACGTCGTCAGCTAGAAAATTGTGGTTTTTACACGTTGCGGAAGTTGCTGCAACATTTTCCTCGAACCTAT GCTGATTTGCAGAATGCACATTTTGGAATTGACGATGGACAGTATTTGATTTCTGTTGGGAAAGTAACATCTTCCAGGGCTGTTAAAGCCAGTTATTCAC TAGCATTTGCTGAAGTGATTGTGGCTTGTGAGATTATAAACAATGAATCTAAGCACTTGATTGATGACAACAATAGTGGAGGAAAGAAGACGATTTATCT GCACCTTAAGAAATATTTTCGTGGCACCCGTTTTACTTGTCTACCATTTCTTAAAAAAGTCGAAGCGAAACATAAATTGGGAGATGTTGTCTGCGTTAGT GGTAAGGTTAGAACCATGAGTACTAAAGGAGATCACTATGAAATAAGAGAATACAATATTGATGTGCTAGAAGACAGAGAAGATTCATCTTCTATTGTGG AAGGGAGGCCATATCCTATATACCCTTCAAAAGGAGGCTTAAATCCTGACTTTCTTCGGGATACTATTTCAAGAGCTGTACGAGCCCTGCTTGCTGATGT TGATCCTATTCCAAAAGAAATCATTCAGGATTTTGGACTTTTACGTCTCCATGAAGCATATATAGGGATTCACCAGCCAAAAAATGCAGATGAGGCTGAT TTAGCTCGCAAAAGGCTTATTTTTGATGAGTTCTTTTATCTACAGTTGGGGCGCTTATTTCAAATGCTTGAAGGTCTTGGTTCGCGAATGGAGAAAGATG GACTGCTGGACAAGTACAGCAAACCTGAGTTGAATGCTGTTTATGTGGAAGAATGGTCCAATCTCACCAAGAAATTCTTGAAGGCTCTTCCATATTCCCT TACTTCAAGCCAGCTAAGTGCTTCTTCACAAATTATATGGGATCTGAAGCGACCAGTTCCCATGAATCGACTCTTACAGGGTGATGTTGGATGTGGGAAA ACGATTGTAGCTTTTCTGGCTTGTATGGAGGTTATTGGTTCTGGTTATCAGGCAGCTTTCATGGTTCCAACGGAGTTGCTTGCGATCCAACATTATGAAC AGTTACTTAATTTGCTAGAGACTATGGGCGAAGTCCAGTCAAAGCCTTCTGTTGCTTTATTAACAGGATCAACCCCATCGAAACAATCACGGATGATTCG TAGGGATCTCCAAAGTGGAGACATCTCTATGGTCATTGGAACCCACAGTTTGATATCTGAGAATGTAGAATTCTCTGCTTTACGCATTGCTGTAGTAGAT GAGCAACAACGCTTCGGTGTGATCCAGAGAGGAAGGTTTAATAGTAAGCTATACCATAGCCCTCTAAGTTCAAGAATGTCAGCATCCAACACGGATACAT CTTCAGAAGGTGATTTCCATATGGCCCCACATGTTCTTGCCATGTCAGCCACTCCCATTCCAAGGACACTTGCTCTGGCGTTATATGGAGATATGTCTTT AACACAAATAACTGACTTGCCTCCTGGAAGAGTTCCGGTTGAAACATATATTTTTGAAGGAAATTATGATGGCTTTGAAGATGTCTACAAGATGATGAGA GATGAGTTAGAGGCAGGGGGGAGAGTGTATCTTGTGTACCCAGTCATTGAACAATCAGAGCAACTGCCTCAGCTACGTGCTGCTGCTGCTGATCTTGAAG TTATATCTCACAGGTTTCAGGATTACAACTGTGGGTTGTTACATGGAAAAATGAAGAGTGATGATAAAGATGAAGCGTTGAAACGATTCAGATCTGGTGT AACACATATACTGCTTTCCACTCAAGTAATTGAGATTGGTGTTGATGTCCCAGATGCATCTATGATGGTTGTTATGAATGCTGAAAGATTTGGAATAGCT CAGTTGCATCAACTTAGAGGACGAGTTGGACGTGGGGCAAGGAAGTCCAAATGTTTACTGGTCGCATCTACAACCAGCAGCCTTGACCGTCTGAAAGTGC TGGAGAAGTCATCAGATGGTTTTTACTTGGCAAATATGGATCTTCTTCTCCGTGGACCTGGCGACTTGCTCGGGAAAAAGCAATCTGGACATCTTCCAGA GTTTCCTATTGCCAGGTTGGAGATAGATGGGAATATTTTGCAAGAAGCACATGCTGCGGCACTGAAAGTTCTTGGTGAGTCTCATGACTTGGAGAGATTT CCAGCGCTCAAAGCGGAGCTTAGTATGCGACAACCATTATGTCTTCTTGGGGATTGA
AA sequence Show only first row Show all	>Potri.010G112500.1 pacid=42797963 polypeptide=Potri.010G112500.1.p locus=Potri.010G112500 ID=Potri.010G112500.1.v4.1 annot-version=v4.1 MAPTLSAMGSFRICCSGKWPTTIVFFKAERGYRSALSRNMRFNNFVFRISKFPSCSKHTFVERLFKQAGKHGEQSISNRSKLLNRVQALMDYDGFHDLIE NETAAKQFRGNAKDDTDDFDVSLACKRFPSIVLGSSPPVELYDESEINSLLAAKILEGFLPNAMGVKCVDPDTLHEQLTSPHTENVNSSMPKELRGESSY ILSEFREENTYTSKEIKEENLHSLPLYSPDMTLETEEKIVPKIGMEEYTTKVELESQVNLAYLDKPISCLPGLSTRQRRQLENCGFYTLRKLLQHFPRTY ADLQNAHFGIDDGQYLISVGKVTSSRAVKASYSLAFAEVIVACEIINNESKHLIDDNNSGGKKTIYLHLKKYFRGTRFTCLPFLKKVEAKHKLGDVVCVS GKVRTMSTKGDHYEIREYNIDVLEDREDSSSIVEGRPYPIYPSKGGLNPDFLRDTISRAVRALLADVDPIPKEIIQDFGLLRLHEAYIGIHQPKNADEAD LARKRLIFDEFFYLQLGRLFQMLEGLGSRMEKDGLLDKYSKPELNAVYVEEWSNLTKKFLKALPYSLTSSQLSASSQIIWDLKRPVPMNRLLQGDVGCGK TIVAFLACMEVIGSGYQAAFMVPTELLAIQHYEQLLNLLETMGEVQSKPSVALLTGSTPSKQSRMIRRDLQSGDISMVIGTHSLISENVEFSALRIAVVD EQQRFGVIQRGRFNSKLYHSPLSSRMSASNTDTSSEGDFHMAPHVLAMSATPIPRTLALALYGDMSLTQITDLPPGRVPVETYIFEGNYDGFEDVYKMMR DELEAGGRVYLVYPVIEQSEQLPQLRAAAADLEVISHRFQDYNCGLLHGKMKSDDKDEALKRFRSGVTHILLSTQVIEIGVDVPDASMMVVMNAERFGIA QLHQLRGRVGRGARKSKCLLVASTTSSLDRLKVLEKSSDGFYLANMDLLLRGPGDLLGKKQSGHLPEFPIARLEIDGNILQEAHAAALKVLGESHDLERF PALKAELSMRQPLCLLGD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01440			DEAD/DEAH box RNA helicase fam...		Potri.010G112500 [exp]	0	1
AT5G02250		ATMTRNASEII, RN...	ribonucleotide reductase 1, EM...		Potri.006G086200 [exp]	3.60	0.9069
AT4G32551		RON2, LUG	ROTUNDA 2, LEUNIG, LisH dimeri...		Potri.006G248100 [exp]	6.92	0.8667	LUG.1
AT3G46970		ATPHS2, PHS2	Arabidopsis thaliana alpha-glu...		Potri.004G048600 [exp]	7.14	0.8804
AT2G31530		EMB2289, SCY2	SECY HOMOLOG 2, EMBRYO DEFECTI...		Potri.002G053900 [exp]	8.83	0.8732
AT1G22770		FB, GI	gigantea protein (GI) (.1)		Potri.005G196700 [exp]	9.74	0.8451	GI.1
AT3G43240	ARID		ARID/BRIGHT DNA-binding domain...		Potri.006G135500 [exp]	9.79	0.8531
AT3G18840			Tetratricopeptide repeat (TPR)...		Potri.004G151500 [exp]	14.31	0.8240
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Potri.012G056100 [exp]	17.14	0.8832
AT4G10070			KH domain-containing protein (...		Potri.013G099800 [exp]	18.89	0.8431
AT5G58870		FTSH9	FTSH protease 9 (.1)		Potri.009G043100 [exp]	19.59	0.8650

Compare expression of checked genes

Potri.010G112500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.