Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01430 213 / 4e-69 HD ATHB17, ATHB-17 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17, homeobox-leucine zipper protein 17 (.1) AT1G70920 192 / 5e-62 HD ATHB18 homeobox-leucine zipper protein 18 (.1) AT5G06710 172 / 2e-52 HD HAT14 homeobox from Arabidopsis thaliana (.1.2) AT4G37790 168 / 2e-51 HD HAT22 Homeobox-leucine zipper protein family (.1) AT3G60390 163 / 4e-49 HD HAT3 homeobox-leucine zipper protein 3 (.1) AT4G16780 160 / 2e-48 HD ATHB2, HAT4, ATHB-2 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) AT2G44910 159 / 8e-48 HD ATHB4, ATHB-4 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 4, homeobox-leucine zipper protein 4 (.1) AT2G22800 158 / 1e-47 HD HAT9 Homeobox-leucine zipper protein family (.1) AT4G17460 156 / 6e-47 HD HAT1 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1) AT5G47370 154 / 5e-46 HD HAT2 Homeobox-leucine zipper protein 4 (HB-4) / HD-ZIP protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G129500 [exp] 342 / 1e-120 AT2G01430 204 / 1e-65 ARABIDOPSIS THALIANA HOMEOBOX-LEUCINE ZIPPER PROTEIN 17, homeobox-leucine zipper protein 17 (.1) Potri.005G147100 [exp] 185 / 7e-58 AT4G37790 270 / 1e-90 Homeobox-leucine zipper protein family (.1) Potri.007G008200 [exp] 182 / 6e-57 AT4G37790 299 / 3e-102 Homeobox-leucine zipper protein family (.1) Potri.002G113400 [exp] 171 / 8e-53 AT4G37790 210 / 3e-67 Homeobox-leucine zipper protein family (.1) Potri.009G023600 [exp] 171 / 1e-51 AT5G06710 243 / 8e-78 homeobox from Arabidopsis thaliana (.1.2) Potri.014G045100 [exp] 169 / 1e-51 AT3G60390 263 / 5e-87 homeobox-leucine zipper protein 3 (.1) Potri.001G155100 [exp] 169 / 2e-51 AT4G16780 335 / 6e-116 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Potri.016G059000 [exp] 168 / 7e-51 AT5G06710 241 / 8e-78 homeobox from Arabidopsis thaliana (.1.2) Potri.003G079800 [exp] 166 / 2e-50 AT4G16780 320 / 8e-110 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004161 [exp] 175 / 3e-53 AT5G06710 263 / 5e-86 homeobox from Arabidopsis thaliana (.1.2) Lus10004759 [exp] 172 / 2e-52 AT4G16780 305 / 1e-103 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10021064 [exp] 169 / 2e-52 AT5G06710 265 / 3e-88 homeobox from Arabidopsis thaliana (.1.2) Lus10007849 [exp] 171 / 3e-52 AT4G16780 303 / 6e-103 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10040175 [exp] 167 / 9e-51 AT4G16780 280 / 1e-93 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10004377 [exp] 167 / 2e-50 AT4G16780 265 / 1e-87 ARABIDOPSIS THALIANA HOMEOBOX PROTEIN 2, homeobox protein 2 (.1) Lus10016254 [exp] 167 / 4e-50 AT5G06710 274 / 4e-90 homeobox from Arabidopsis thaliana (.1.2) Lus10029293 [exp] 165 / 2e-49 AT5G06710 274 / 5e-90 homeobox from Arabidopsis thaliana (.1.2) Lus10019256 [exp] 135 / 2e-39 AT4G37790 162 / 3e-49 Homeobox-leucine zipper protein family (.1) Lus10011569 [exp] 128 / 2e-36 AT4G37790 162 / 3e-49 Homeobox-leucine zipper protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF00046 [poplar] [flax] Homeodomain Homeodomain CL0123 [poplar] [flax] PF02183 [poplar] [flax] HALZ Homeobox associated leucine zipper
Representative CDS sequence Show only first row Show all	>Potri.010G112600.1 pacid=42800121 polypeptide=Potri.010G112600.1.p locus=Potri.010G112600 ID=Potri.010G112600.1.v4.1 annot-version=v4.1 ATGGCCGTTTCACGCTCAAGCTCTTCTAGCTTGGAGCTGACCATGTCCATGCCTGGTTTCGTTTCTTCTCCTTCTTTTCCTTCATCTGTGAAAGATTTCG ACATAAACCAAGTACCATCAGGAGCAGCAGAAGAAGAATGGATCTCTGCAGGCATGGAGGATGAAGAGGAAAGCACTGATGGAGCCCCACCTCGCAAAAA ACTCCGTCTCTCTAAAGAACAGTCTCGCCTTCTTGAAGAAAGTTTCAGGCAACATCACTCCTTGAATCCCAGACAGAAAGAAGCATTAGCTTTGCAGTTG AAGCTGAGGCCTAGACAAGTTGAGGTGTGGTTTCAAAACCGCAGGGCCAGGAGCAAACTTAAGCAGACAGAGATGGAGTGCGAGTACTTGAAGAGATGGT TTGGTTCATTAACAGAGCAGAACAGGAGGCTGCAAAGAGAAGTAGAAGAGCTTAGGGCATTAAAGGTGGGTCCACCAACCGTGATATCTCCTCACAGTCG TGAACCTCTCCCAGCATCCACGCTTACAATGTGTCCGCGTTGTGAACGTGTGACAACCACCGGCGTGGACAAGGGCTCCACCAAAACCACACGTACTGCT GTGGCCAACCCAACAATAGCCGCCACCTTGTCCTCTGAAAATGGAGCACCCGCACTCCAATCTCGGCAATCTTGCTAG
AA sequence Show only first row Show all	>Potri.010G112600.1 pacid=42800121 polypeptide=Potri.010G112600.1.p locus=Potri.010G112600 ID=Potri.010G112600.1.v4.1 annot-version=v4.1 MAVSRSSSSSLELTMSMPGFVSSPSFPSSVKDFDINQVPSGAAEEEWISAGMEDEEESTDGAPPRKKLRLSKEQSRLLEESFRQHHSLNPRQKEALALQL KLRPRQVEVWFQNRRARSKLKQTEMECEYLKRWFGSLTEQNRRLQREVEELRALKVGPPTVISPHSREPLPASTLTMCPRCERVTTTGVDKGSTKTTRTA VANPTIAATLSSENGAPALQSRQSC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01430	HD	ATHB17, ATHB-17	ARABIDOPSIS THALIANA HOMEOBOX-...		Potri.010G112600 [exp]	0	1
AT2G43120			RmlC-like cupins superfamily p...		Potri.002G231900 [exp]	3.16	0.7178	Pt-PRN.2
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Potri.005G053500 [exp]	4.00	0.7956
AT5G18170		GDH1	glutamate dehydrogenase 1 (.1)		Potri.019G034800 [exp]	6.70	0.7106	Pt-GDH1.1
AT4G24120		ATYSL1, YSL1	YELLOW STRIPE like 1 (.1)		Potri.001G082400 [exp]	7.74	0.7523
AT3G48660			Protein of unknown function (D...		Potri.015G098300 [exp]	11.61	0.7488
AT5G42785			unknown protein		Potri.005G228800 [exp]	14.28	0.7173
AT1G62710		BETAVPE, BETA-V...	beta vacuolar processing enzym...		Potri.003G113300 [exp]	17.66	0.7190
AT3G23430		PHO1, ATPHO1	ARABIDOPSIS PHOSPHATE 1, phosp...		Potri.010G069000 [exp]	21.16	0.7139
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Potri.001G177400 [exp]	22.97	0.6600	IAA8.3
AT4G39210		APL3	Glucose-1-phosphate adenylyltr...		Potri.009G118800 [exp]	25.21	0.7055	Pt-APL3.2

Compare expression of checked genes

Potri.010G112600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.