Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G70950 147 / 9e-38 TPX2 (targeting protein for Xklp2) protein family (.1) AT1G23060 116 / 6e-28 unknown protein AT1G24160 88 / 5e-18 unknown protein AT1G70100 85 / 3e-17 unknown protein AT3G26050 82 / 6e-16 TPX2 (targeting protein for Xklp2) protein family (.1) AT3G27350 79 / 7e-16 unknown protein AT5G40700 77 / 3e-15 unknown protein AT4G32330 76 / 4e-14 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) AT3G01710 72 / 4e-13 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) AT2G35880 72 / 4e-13 TPX2 (targeting protein for Xklp2) protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G129300 [exp] 839 / 0 AT1G70950 241 / 2e-72 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.008G180900 [exp] 91 / 7e-19 AT3G26050 119 / 4e-28 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.010G038100 [exp] 91 / 7e-19 AT1G70100 196 / 4e-56 unknown protein Potri.008G192800 [exp] 89 / 2e-18 AT1G70100 197 / 6e-57 unknown protein Potri.001G336300 [exp] 88 / 6e-18 AT3G27350 124 / 1e-31 unknown protein Potri.010G053200 [exp] 86 / 2e-17 AT3G26050 113 / 1e-26 TPX2 (targeting protein for Xklp2) protein family (.1) Potri.019G075700 [exp] 74 / 2e-13 AT5G40700 74 / 1e-14 unknown protein Potri.018G027500 [exp] 73 / 2e-13 AT4G32330 268 / 2e-85 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Potri.013G101300 [exp] 72 / 5e-13 AT1G24160 71 / 7e-13 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029213 [exp] 87 / 5e-19 AT1G24160 135 / 2e-36 unknown protein Lus10010725 [exp] 89 / 3e-18 AT1G70100 213 / 2e-62 unknown protein Lus10037054 [exp] 87 / 1e-17 AT3G26050 132 / 9e-33 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10032115 [exp] 81 / 1e-15 AT3G01710 181 / 4e-52 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10003514 [exp] 74 / 9e-14 AT1G24160 76 / 2e-14 unknown protein Lus10014571 [exp] 74 / 2e-13 AT3G01710 100 / 1e-22 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2) Lus10002952 [exp] 71 / 6e-13 AT1G24160 77 / 1e-15 unknown protein Lus10002915 [exp] 71 / 7e-13 AT4G32330 228 / 2e-70 TPX2 (targeting protein for Xklp2) protein family (.1), TPX2 (targeting protein for Xklp2) protein family (.2), TPX2 (targeting protein for Xklp2) protein family (.3) Lus10016193 [exp] 66 / 4e-11 AT2G35880 181 / 7e-52 TPX2 (targeting protein for Xklp2) protein family (.1) Lus10029355 [exp] 64 / 2e-10 AT2G35880 185 / 3e-53 TPX2 (targeting protein for Xklp2) protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06886 [poplar] [flax] TPX2 Targeting protein for Xklp2 (TPX2) domain
Representative CDS sequence Show only first row Show all	>Potri.010G113000.6 pacid=42800251 polypeptide=Potri.010G113000.6.p locus=Potri.010G113000 ID=Potri.010G113000.6.v4.1 annot-version=v4.1 ATGGCGGGAGAATTTCAAGAACCATTTAGCCTCAGCAACTGCATTAGCTTTCAGGTAGATTCTCTGCACTCTGGGTCCATATCCTTTGGAAGATTTAAGA GTGAAGACTTGTCTTGGGAGAGAAGATCGTCTTTTTCTCACAATAGGTATCTTGAAGAGGTTGAAAAATGCTCAAAACCAGGTTCTGTAATCCAGAAGAA AGCTTATTTTGAAGCCCATTTCAAGAAGAAGGGTATTCTGCGTCCGGATTCACTTGACGGCCTGAGTGGGAGGGGATGCCAGAACTGCGAAGATGACGAG TACGGAAATTTGGGTCAAGGAGAAGAAGATGATGATATGAACGGAAGTTGCAATTATTCTCACCGTGAGGATGATGTGCTGGAAAGTGTGGACTGTGACG AATTTGATTATGGAAATCAAGGAGATCAGTTTGATCATGTAAATGATGAGAGCCATCGTGCTTGCTTTGATGAGAGCCCTGAGGATCCGGATTATCATGG ACAATTAGAGGTCATTGAATGTGAAAGAGAGGATCCTATTGTTCTGTCTTCTGAATCTCCAGTGGAAGCTGCTTTGGATGATGCTAATGTTTCGGTCAGA GGTGTGGGTGAATATGTTAAACCTGAGGAAGCACATCAAATTGAAACTGGACTTGACGAGTCGCATCTCAATAATGACAAACAAGAGATGGAAATGAAAG ATAACATTAATGATAATGTTGCTAAAATAGATGAATCATCTGTGACAATTGTTCTGTCCCCAAAAAGTGGAACTGCCAAGGATCTTGACAACACTAGTCC AGTGCATCAACAAAATCTTTCTCCAAAGCTGAGAGATTGTGTGGAAAGTAAATCCACGAACCCCAGAATGAGGTCTCCGATTAATGGCAGTCAATTCCAG AAGATCCTTAACAACGTGTCAAAAACTACTGCAAAAACTCAGAATAGAGGAGAAGGAGAAACACCACAAAGAGCAAAATCAGAAAAGCAGTCATCACGAG CTACCACTCCTACTAGACGTACGTTGCATAGAGCTAAAAATGAAGAGAATTCTGAAAGTGGCAATTTAAGGTTACATCCTGTGAATAGAAGGTACTTTCT GATTCGTGCAAATTGCAAACCTGCATCTTCCATGTTTTCGGCCTTAAAGATGTCTGTATTGTTGTGCAGTGAAAGGGCATCAAGAGTAAATAAATTTGAA TCCCCACCATCTAGATCAAAAAAAGTTGAACCTATGTCTCATCTAAGAGCGAACAGAAATAAGCAGATTGTTAATTCAATAAAGCCAGACACAATGCCAT GCGCTGCAGCCTTCAGTTTCAAAAGTGATGAAAGAGCAGAAAGGCGAAAAGAGTTCTATATGAAGTTGGAAGAAAAATTGCATGCTAAGGAGGCAGAAAT GAATCAGATTCAAGCAAAAACACAAGAACAGAAGAAGGCTGAAATTAAAAAATTCAGGGAAAGACTTAATTTTAAAGCTGCACCCATGCCTTCATTCTAT CGTGTTGCTGTATCACCAGGCTCTGATGGGAACAAGGCTTCATCATCTAAAACCAAACCAGCTAAAGCACAACACAGGTCAACAAGTCCAGGGAGTGGAG CTGCTGCGAGATCACAATTACTTTCAAGGACTGGAAATGACCAAGCCGTCACTGCTAATGAATCTGTAAAACCTACTAACCAGCCGGATCCCTCAGGAAG GACTGATCATCAGGCAAGAAATGTTTCTGAGGCTCGTGAAACTAAACCAACCAACAATAATAGGCACAAGCCAGAAGCTGTAACTAAAATTGGTGTCACT GGTAAGAATGAAAGAGGGAAGGTGAAGGATGCTAGTTTGCAAAGGCATCAAGTATCAGAAAATACCAGAGTATCAAAAGACCTGAAGGTTGAAGGGAAAG CAAAAACGAGAAGCCACAGAAGTAACAGCGAGATGTTGAGGAAAAGTATAAAACACATTGAAATTGGAAGCAATACTGGAAAGGGTAATCTAGCTGTTGG TGTAGCCATCCTGAATTGA
AA sequence Show only first row Show all	>Potri.010G113000.6 pacid=42800251 polypeptide=Potri.010G113000.6.p locus=Potri.010G113000 ID=Potri.010G113000.6.v4.1 annot-version=v4.1 MAGEFQEPFSLSNCISFQVDSLHSGSISFGRFKSEDLSWERRSSFSHNRYLEEVEKCSKPGSVIQKKAYFEAHFKKKGILRPDSLDGLSGRGCQNCEDDE YGNLGQGEEDDDMNGSCNYSHREDDVLESVDCDEFDYGNQGDQFDHVNDESHRACFDESPEDPDYHGQLEVIECEREDPIVLSSESPVEAALDDANVSVR GVGEYVKPEEAHQIETGLDESHLNNDKQEMEMKDNINDNVAKIDESSVTIVLSPKSGTAKDLDNTSPVHQQNLSPKLRDCVESKSTNPRMRSPINGSQFQ KILNNVSKTTAKTQNRGEGETPQRAKSEKQSSRATTPTRRTLHRAKNEENSESGNLRLHPVNRRYFLIRANCKPASSMFSALKMSVLLCSERASRVNKFE SPPSRSKKVEPMSHLRANRNKQIVNSIKPDTMPCAAAFSFKSDERAERRKEFYMKLEEKLHAKEAEMNQIQAKTQEQKKAEIKKFRERLNFKAAPMPSFY RVAVSPGSDGNKASSSKTKPAKAQHRSTSPGSGAAARSQLLSRTGNDQAVTANESVKPTNQPDPSGRTDHQARNVSEARETKPTNNNRHKPEAVTKIGVT GKNERGKVKDASLQRHQVSENTRVSKDLKVEGKAKTRSHRSNSEMLRKSIKHIEIGSNTGKGNLAVGVAILN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G70950			TPX2 (targeting protein for Xk...		Potri.010G113000 [exp]	0	1
AT1G19220	ARF	IAA22, ARF11, A...	indole-3-acetic acid inducible...		Potri.018G145800 [exp]	1.73	0.7809	Pt-CSARF2.3
AT3G16770	AP2_ERF	RAP2.03, ATEBP,...	RELATED TO AP2 3, ETHYLENE RES...		Potri.008G210900 [exp]	2.00	0.7903	Pt-RAP2.4,ERF35
AT1G70950			TPX2 (targeting protein for Xk...		Potri.008G129300 [exp]	2.44	0.7592
AT1G18400	bHLH	bHLH044, BEE1	BR enhanced expression 1 (.1)		Potri.004G099400 [exp]	6.00	0.7854
AT2G39980			HXXXD-type acyl-transferase fa...		Potri.008G065000 [exp]	8.66	0.7696
AT1G52290		AtPERK15	proline-rich extensin-like rec...		Potri.003G053301 [exp]	9.16	0.7166
AT1G30620		MURUS4, HSR8, U...	UDP-D-XYLOSE 4-EPIMERASE 1, MU...		Potri.016G020000 [exp]	11.74	0.6919
					Potri.006G037900 [exp]	14.96	0.7492
AT4G33300		ADR1-L1	ADR1-like 1 (.1.2)		Potri.002G129300 [exp]	16.73	0.6940	ADR1.1
AT1G60010			unknown protein		Potri.010G095400 [exp]	18.43	0.7747

Compare expression of checked genes

Potri.010G113000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.