Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G23030 732 / 0 PUB11 ARM repeat superfamily protein (.1) AT1G71020 717 / 0 ARM repeat superfamily protein (.1.2) AT3G46510 476 / 7e-161 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT3G54850 448 / 4e-150 ATPUB14 plant U-box 14 (.1) AT2G28830 419 / 4e-135 AtPUB12 PLANT U-BOX 12 (.1) AT5G42340 362 / 2e-116 PUB15 Plant U-Box 15 (.1) AT3G07360 246 / 1e-74 ATPUB9 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) AT1G29340 248 / 1e-72 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT2G23140 236 / 9e-68 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT3G01400 223 / 5e-67 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G128600 [exp] 1098 / 0 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1) Potri.008G035700 [exp] 479 / 4e-162 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.010G226500 [exp] 465 / 6e-157 AT3G54850 806 / 0.0 plant U-box 14 (.1) Potri.009G029600 [exp] 466 / 1e-156 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.001G238500 [exp] 461 / 6e-155 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.002G009900 [exp] 416 / 3e-137 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.009G165900 [exp] 399 / 1e-130 AT5G42340 671 / 0.0 Plant U-Box 15 (.1) Potri.004G205000 [exp] 375 / 1e-121 AT5G42340 654 / 0.0 Plant U-Box 15 (.1) Potri.019G029500 [exp] 280 / 1e-87 AT3G07360 495 / 6e-174 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043471 [exp] 792 / 0 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10034113 [exp] 748 / 0 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10040834 [exp] 465 / 5e-156 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10016565 [exp] 462 / 4e-155 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10037970 [exp] 461 / 5e-155 AT3G54850 803 / 0.0 plant U-box 14 (.1) Lus10012260 [exp] 381 / 1e-123 AT5G42340 695 / 0.0 Plant U-Box 15 (.1) Lus10016016 [exp] 377 / 4e-122 AT5G42340 702 / 0.0 Plant U-Box 15 (.1) Lus10007511 [exp] 318 / 2e-99 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10017444 [exp] 304 / 3e-94 AT3G46510 381 / 2e-123 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10038699 [exp] 285 / 6e-88 AT3G54850 599 / 0.0 plant U-box 14 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00514 [poplar] [flax] Arm Armadillo/beta-catenin-like repeat CL0229 [poplar] [flax] RING PF04564 [poplar] [flax] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Potri.010G113900.1 pacid=42798348 polypeptide=Potri.010G113900.1.p locus=Potri.010G113900 ID=Potri.010G113900.1.v4.1 annot-version=v4.1 ATGGCCGGCGGAGAGGAAAGCCTGGTCACGTCCGTTTTCCTTCTCGACCTCGTCCGCCAGATTTGTGTTGTGGGGACATCCGGTGCCGGCGATAAGAATA ATAACAACAATGTTTTCAGAAAGGATTGCATGGATCTGGTGCGCAGGGTTTCACTGTTGACACATTTTCTTGAAGAGATAAGCGGGCAATTAGGGAGTTT GAATGCGTTGGGTTCTTGTTCGTCTTCGTCCAAGGAAATTAATTGGTCGTCGGATCTGGTCGCTGCTCTCCAGTCTGCTAAGAATCTCTTATCGCTTGCT GGGATTTTTCAATCCACTAATGATTCTGATAGTGCTGCCACGAAAATTGCGACCCTCTTTCACAGCGTGACATGGAAACTGGAGAAGTCTTTGGCTAACA TACCATACGATCAATTTGACATATCAGAGGAAGTGCAAGAACAGGTTGCATTGGTGAGGGCACAGTTGCGGAGAGCCACGGAAAGATATGGGTCAAAGAA CTCAAGGGAGATTTCTTTTGCCTTTGCCCAGCCGATAGAAAAAGATGGTGATCAATCACCAATGGGCAACAGGTTAACTAGAAGTCGGCATATTGAGAAT AGTGGCGGTGTCAGTCACAAAGTTGCAGAAAACATTCAGACTGCAGTTTCAGGAAGTAATGGCTCAAAAGATCACTCTGCATATCAGGTGGCCAGTGAAT TGAATGTTGTTGATGGTGGCGAGAAAGATTCTTTGGGTAACAAGAGTGGTGAAGACTTAAAGAAGCATGATACACTTAAAATCCCTGATGATTTTCTGTG CCCCATATCTCTTGAACTAATGAGGGATCCTGTTATTGTGGCTACAGGACAGACATATGAAAGGTCTTACATGCAGAGATGGATAGATACCGGCAACTCA ACATGTCCAAAAACTCAGCAGAAGCTAGAACATTTGACATTGACCTCAAATTATGTTCTTAGAAGTTTAATAACTCAGTGGTGTGCAGAGCACAAGGTTG AGCAACCAACAGGGTTAGCAAATGGGAGGATAAAAAAAAGTGATGGATCTTTCCGTGATGTTAGTGGGGACATGGCACCCATCCAGGCAATTGTCCGCAA GCTCTCAAGCCGATTGATTGAGGAGCGTAGAGCTGCAGTCTCTGAAGTCCGATCGTTGTCCAAAAGAAGCACAGATAACAGAATACTGATAGCAGGAGCA GGAGCCATACCTGTTCTTGTCAACCTTTTAACATCTGAAGATACGTCAATACAAGAAAATGCTGTTACTTCCATCCTTAACCTTTCTATATATGAAAATA ACAAGGCACTGATAATGCTTGCCGGTGCGGTTCCTTCAATTGTCCAAGTTCTCAGAGCTGGGAGTGTGGAAGCAAGAGAGAACGCTGCAGCAACCCTTTT CAGTTTGTCACTTGCAGATGAGAACAAAATAATAATTGGTGCATCAGGAGCAATACCAGCTTTGGTGGAATTGCTTGAAAATGGAAGCACCAGAGGAAAG AAAGATGCTGCAACAGCCTTGTTCAATCTTTGCATTTATCAAGGGAATAAGGGCAGGGCTGTAAGGGCAGGGATCATCACAGCCTTATTAAAGATGCTTA CAGATTCCAGAAACTGTATGGTTGACGAGGCATTGACTATTCTGTCAGTTCTAGCTAGCAACCAAGAAGCAAAGGTTGCTATAGTAAAAGCCAGCACTAT ACCTGTTCTGATAGATTTGTTGAGGACAGGACTGCCCCGCAACAAAGAGAATGCATCAGCCATTTTGCTCTCCTTGTGCAAGAGAGATCCTGAGAATCTT GCCTGTATAAGTAGACTTGGTGCTGTCATACCTTTGACGGAGCTTGCTAAAAATGGTACAGAGAGGGCGAAGCGAAAGGCTACTTCAATGTTGGAACATC TTCGGAGGCTACAACAGAGCTAA
AA sequence Show only first row Show all	>Potri.010G113900.1 pacid=42798348 polypeptide=Potri.010G113900.1.p locus=Potri.010G113900 ID=Potri.010G113900.1.v4.1 annot-version=v4.1 MAGGEESLVTSVFLLDLVRQICVVGTSGAGDKNNNNNVFRKDCMDLVRRVSLLTHFLEEISGQLGSLNALGSCSSSSKEINWSSDLVAALQSAKNLLSLA GIFQSTNDSDSAATKIATLFHSVTWKLEKSLANIPYDQFDISEEVQEQVALVRAQLRRATERYGSKNSREISFAFAQPIEKDGDQSPMGNRLTRSRHIEN SGGVSHKVAENIQTAVSGSNGSKDHSAYQVASELNVVDGGEKDSLGNKSGEDLKKHDTLKIPDDFLCPISLELMRDPVIVATGQTYERSYMQRWIDTGNS TCPKTQQKLEHLTLTSNYVLRSLITQWCAEHKVEQPTGLANGRIKKSDGSFRDVSGDMAPIQAIVRKLSSRLIEERRAAVSEVRSLSKRSTDNRILIAGA GAIPVLVNLLTSEDTSIQENAVTSILNLSIYENNKALIMLAGAVPSIVQVLRAGSVEARENAAATLFSLSLADENKIIIGASGAIPALVELLENGSTRGK KDAATALFNLCIYQGNKGRAVRAGIITALLKMLTDSRNCMVDEALTILSVLASNQEAKVAIVKASTIPVLIDLLRTGLPRNKENASAILLSLCKRDPENL ACISRLGAVIPLTELAKNGTERAKRKATSMLEHLRRLQQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G23030		PUB11	ARM repeat superfamily protein...		Potri.010G113900 [exp]	0	1
AT5G64740		PRC1, IXR2, E11...	PROCUSTE 1, ISOXABEN RESISTANT...		Potri.005G087500 [exp]	1.41	0.8324	ATH.1
AT3G12010			unknown protein		Potri.016G060500 [exp]	12.24	0.7499
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Potri.006G110000 [exp]	13.22	0.7412
AT1G57680			unknown protein		Potri.003G003500 [exp]	22.29	0.7113
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Potri.009G148600 [exp]	25.45	0.7421
AT5G07720			Galactosyl transferase GMA12/M...		Potri.015G061800 [exp]	26.30	0.7824
AT1G21660			Chaperone DnaJ-domain superfam...		Potri.005G181700 [exp]	26.32	0.7152
AT5G57330			Galactose mutarotase-like supe...		Potri.003G187300 [exp]	26.73	0.7736
AT5G23340			RNI-like superfamily protein (...		Potri.006G238300 [exp]	27.42	0.6991
AT4G26690		GDPDL3, GPDL2, ...	SHAVEN 3, MUTANT ROOT HAIR 5, ...		Potri.001G360800 [exp]	31.46	0.7577

Compare expression of checked genes

Potri.010G113900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.