Plant FIBer expression Database

/IMPCH1 (Potri.010G114400) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol /IMPCH1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G35040 992 / 0 AICARFT/IMPCHase bienzyme family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G128301
[exp]
91 / 3e-22 AT2G35040 84 / 2e-20 AICARFT/IMPCHase bienzyme family protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10013871
[exp]
993 / 0 AT2G35040 989 / 0.0 AICARFT/IMPCHase bienzyme family protein (.1.2)
Lus10023871
[exp]
983 / 0 AT2G35040 976 / 0.0 AICARFT/IMPCHase bienzyme family protein (.1.2)
Lus10014374
[exp]
963 / 0 AT2G35040 945 / 0.0 AICARFT/IMPCHase bienzyme family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0109 CDA PF01808 AICARFT_IMPCHas AICARFT/IMPCHase bienzyme
Representative CDS sequence
>Potri.010G114400.1 pacid=42800299 polypeptide=Potri.010G114400.1.p locus=Potri.010G114400 ID=Potri.010G114400.1.v4.1 annot-version=v4.1
ATGTTAAGCTTGTCTGCTGCTCCCACCACAGCCGCCCCCGCCGCTAAGCTTTCTCGTGTCCCCTCCGCTGCACTTCACCAAAAAACTACTTCCGCTGCTT
TTTTCTCCCAAAAGGTTCAGCTGAACTCGCTGCGATCGAGCTGCAGTGCAATCAAATCCATGGCTGATTCTCAAACTATTTCAGTACCGAAGAACGAGCA
ACAATCCCCTGCTTCTGGCAAGAAGCAAGCACTGATATCTTTATCAGACAAAAAGGACCTGGCTTTTCTCGGTACTGGGTTAGAACAATTAGGGTACACG
ATAGTTTCAACAGGAGGAACAGCATCTGCTTTGGAAGGTGCTGGAGTTTCTGTCACTAAAGTAGAACAGCTTACCCTTTTCCCCGAAATGCTTGACGGTC
GTGTGAAAACTTTACACCCCCACATACATGGTGGTATTCTTGCTAGAAGGGACCAAAAACATCATATGGAAGCTCTCAGTGAACATGGAATTGGTAGCTT
TGACGTGGTGGTGGTGAACTTGTACCCCTTTTATGATAAAGTTACTTCAACTGGAGGAATTGAGTTTGAGGATGGAATTGAGAACATTGATATTGGTGGC
CCTGCCATGATCAGAGCTGCTGCAAAGAACCATAAGGATGTCTTAATTGTTGTTGATAATGAAGACTACCCTGGACTTCTGGAATTTCTTAAAGGAGATC
GGGATGACCAACAGTTCCGAAGAAAGCTTGCTTGGAAGGCTTTTCAACATTGTGCTTCCTATGATTCTGCAGTTTCAGAATGGCTATGGAAACAAACTAT
GGGAGATAAATTCCCTCCCAGCTTCACAGTACCTCTTGAGCTTAAGAGTTCGCTTCGTTATGGTGAAAATCCTCATCAAAATGCTGCATTTTACGTTGAC
AAGAGTATTTCTGAAGTAAACGCTGGTGGTATTGCAACAGCTATCCAACATCATGGGAAGGAGATGTCATATAACAACTACTTGGATGCTGATGCAGCTT
GGAATTGTGTGTCAGAGTTTCAGAACCCTACATGTGTAATTGTAAAACATACAAATCCCTGTGGGGTAGCTTCTCGGGGTGATATTCTTGAAGCTTATAG
GTTGGCTGTGAAAGGAGATCCAGTGAGTGCATTTGGTGGTATTGTAGCCTTTAACATAGAAGTTGATGAGGCCCTTGCTAAGGAGATTAGGGAGTTCAGA
AGCCCAACAGATGGTGAAACCCGGATGTTTTATGAGATTGTTGTTGCTCCCAAATATACAAAGAAGGGACTCGAGATCCTCCGTGGCAAATCGAAGACAC
TGAGGATCCTGGAGGCAAAAAGTAATGAGAAAGGAAAGCTTTCACTAAGACAAGTCGGTGGTGGATGGTTAGCTCAGGATTCAGATGATCTTACCCCCCA
AGACATCCAATTTAATGTTGTGTCTGACAAGTCTCCAGCAGAAAGTGAGCTTCATGATGCAGAGTTTGCATGGCTGTGCGCGAAGCATGTTAAGAGCAAT
GCCATTGTAATTGCAAAGAATAACTGTATGCTAGGCATGGGAAGCGGGCAGCCAAACCGTTTAGAAAGCTTGAGAATATCCATGAGGAAAGCAGGAGATG
AGGTCAAGGGAGCTGCTTTGGCCAGCGACGCATTCTTTCCTTTTGCTTGGAACGATGCAGTGGAGGAGGCATGTGAAGCTGGCATTGGTGTTATTGCAGA
GCCTGGTGGTAGCATCAGGGATAAGGACGCGATAGAATGCTGCAACAAGTATGGAGTTTCACTGCTTTTCACCAATGTGAGGCACTTTAGGCACTGA
AA sequence
>Potri.010G114400.1 pacid=42800299 polypeptide=Potri.010G114400.1.p locus=Potri.010G114400 ID=Potri.010G114400.1.v4.1 annot-version=v4.1
MLSLSAAPTTAAPAAKLSRVPSAALHQKTTSAAFFSQKVQLNSLRSSCSAIKSMADSQTISVPKNEQQSPASGKKQALISLSDKKDLAFLGTGLEQLGYT
IVSTGGTASALEGAGVSVTKVEQLTLFPEMLDGRVKTLHPHIHGGILARRDQKHHMEALSEHGIGSFDVVVVNLYPFYDKVTSTGGIEFEDGIENIDIGG
PAMIRAAAKNHKDVLIVVDNEDYPGLLEFLKGDRDDQQFRRKLAWKAFQHCASYDSAVSEWLWKQTMGDKFPPSFTVPLELKSSLRYGENPHQNAAFYVD
KSISEVNAGGIATAIQHHGKEMSYNNYLDADAAWNCVSEFQNPTCVIVKHTNPCGVASRGDILEAYRLAVKGDPVSAFGGIVAFNIEVDEALAKEIREFR
SPTDGETRMFYEIVVAPKYTKKGLEILRGKSKTLRILEAKSNEKGKLSLRQVGGGWLAQDSDDLTPQDIQFNVVSDKSPAESELHDAEFAWLCAKHVKSN
AIVIAKNNCMLGMGSGQPNRLESLRISMRKAGDEVKGAALASDAFFPFAWNDAVEEACEAGIGVIAEPGGSIRDKDAIECCNKYGVSLLFTNVRHFRH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G35040 AICARFT/IMPCHase bienzyme fami... Potri.010G114400
[exp]
0 1 /IMPCH1
AT2G43110 unknown protein Potri.014G150100
[exp]
1.00 0.8259
AT3G27740 VEN6, CARA VENOSA 6, carbamoyl phosphate ... Potri.001G153400
[exp]
1.73 0.7740
AT4G10360 TRAM, LAG1 and CLN8 (TLC) lipi... Potri.019G133500
[exp]
4.24 0.7119
AT3G57050 CBL cystathionine beta-lyase (.1.2... Potri.016G038200
[exp]
4.69 0.7804 CBL.1
AT1G07615 GTP-binding protein Obg/CgtA (... Potri.001G239600
[exp]
11.61 0.7380
AT5G23300 PYRD pyrimidine d (.1) Potri.005G089700
[exp]
14.31 0.7525
AT3G04020 unknown protein Potri.010G205900
[exp]
17.54 0.7564
AT4G00620 EMB3127 EMBRYO DEFECTIVE 3127, Amino a... Potri.002G157100
[exp]
18.33 0.7508
AT5G34930 arogenate dehydrogenase (.1) Potri.008G074500
[exp]
20.97 0.7095
AT1G71430 unknown protein Potri.015G035700
[exp]
23.23 0.6678

Potri.010G114400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.