Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71060 680 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G77360 386 / 5e-129 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G62470 254 / 3e-77 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62540 252 / 2e-76 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G14820 252 / 4e-76 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G49730 243 / 1e-72 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G52640 240 / 2e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G15010 219 / 5e-64 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G11310 215 / 3e-62 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G65820 213 / 2e-61 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G181900 [exp] 390 / 4e-131 AT1G77360 723 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.004G102700 [exp] 260 / 5e-80 AT1G52640 697 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G121400 [exp] 253 / 4e-76 AT3G62470 737 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G084000 [exp] 227 / 2e-67 AT3G22670 489 / 3e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G176100 [exp] 229 / 3e-67 AT3G49730 783 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G070200 [exp] 214 / 4e-63 AT1G74900 590 / 0.0 organelle transcript processing defect 43, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G245400 [exp] 213 / 3e-62 AT1G20300 768 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G053600 [exp] 209 / 3e-60 AT5G15010 659 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G083800 [exp] 207 / 8e-60 AT3G22670 428 / 3e-144 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001633 [exp] 623 / 0 AT1G71060 602 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10001588 [exp] 378 / 3e-124 AT1G77360 679 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10015741 [exp] 256 / 4e-77 AT3G62470 725 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030603 [exp] 248 / 2e-75 AT1G52640 672 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003461 [exp] 250 / 3e-75 AT3G62470 718 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030887 [exp] 234 / 3e-70 AT1G52640 658 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011566 [exp] 223 / 5e-65 AT5G65820 826 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10021991 [exp] 222 / 7e-65 AT5G15010 617 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013139 [exp] 215 / 3e-62 AT5G11310 598 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10008102 [exp] 214 / 5e-62 AT5G11310 620 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.010G114700.3 pacid=42797920 polypeptide=Potri.010G114700.3.p locus=Potri.010G114700 ID=Potri.010G114700.3.v4.1 annot-version=v4.1 ATGGCTCTCTCTCGATTCTCCAGTTTTCTATCAAGAACACCAAATAACCCCTCTCTTCTCTACTCTTCCTCTCCTTTTGTCCTAAGATCACTTGTAAACA TCAAAAACCAAACTCTATCTCTCAATTCTACACCCAATTTTGAGAATCCATTTGGGTCTATGTTAAACCCTCATTTTATCGTCCACAAGTCAACCCATAC TGATTTACAACAAACCGTTGTCCTTACTGATGCCAGCAACCAAACCCCACAAGTTTTGGCTGATAAAATCGTTGAAGACGCTGAAAATATCTGCAAATTA TTATCAAAAAATCCTAATTCTAGCGTTGAGGCTTTGCTCAATAAGGCTTCTATGGAAGTGTCACCAAGTTTGGTTTTTGAGGCATTGAAGAAGCTAAGCA ATGCAGGTGCTCTTGCGTTATCGTTCTTTAGATGGGCAGAGAAGCAAAAAGGGTTTCAATATAGCACAGAGAGCTACCATGCCTTGATTGAATCACTAGG AAAGATCAAGCAGTTTAACGTTATATGGAACTTAGTTACTGACATGAAGCAAAAAGGGTTACTGAATAAAGAAACTTTTGCACTGATTTCAAGGAGATAT GCAAGAGCAAGGAAAGTTAAAGAGGCAGTAGATGCATTTATGAAAATGGAGAAGTTTGGATTGAAGATTGAATCTTCCGATGTTAATAGATTGCTTGATA CTTTATGCAAGTCGAGGCAGGTAGAGAGAGCACAATTGGTGTTTGATAAAATGAATAAGAGAGGATTTGTGGCTGATATTAAGTCATATACGATATTGCT AGAAGGGTGGGGTCAAGAGAAAAACTTGTCGCGGTTGATGGAAGTCTACAACGAAATGAAAGATGAGGGCTTTGAACCGGATGTTGTCACTTACGGTATT CTTATCAATGCCCACTGTAAATCTAGGAGGTATGATGATGCAATCGAGTTGTTTCATGAGATGGAAGCGAAGAACTGCAAGCCTAGTCCACACATATATT GTACTTTGATTAATGGATTGGGAGCTGAAAAAAGGTTGAGTGAAGCACTTGAGTTTTTTGAGCTATCAAAGGCTAGCGGGTTTGTTCCAGAGGCACCTAC TTACAATGCTGTTGTGGGGGCATATTGCTGGTCAGAGAGAATGGATGATGTGCAGAGGACGATTGATGAGATGAGAAAAGGTGGGGTTGGTCCAAGTGCG AGAACTTATGATATTATACTTCACCATCTGATAAGAGCTGGAAAAACTAAAATTGCTTATTCAGTTTTCCAGAAAATGAGTTGTGAGGGATGTCAGCCAT CTGTGAGTACCTATGAGATTATAGTGAGGATGTTTTGCAATGAGGATAGAGTGGATATGGCAATAAAGGTTTGGGATCAGATGAAGGCCAAGGGAATCCT TCCTGTTATGCATATGTTCTCGACATTAATCAATAGTTTGTGCCATGAGAGTAAGCTAGACGAGGCTTGCATGTACTTTCAGGAGATGTTGGATGTGGGC ATTCGGCCTCCAGCACAGTTGTTTAGTAATCTGAAACAAAATCTTCTTGACGAGGGCAAGAAGGACACTGTTGTGGTTTTTGAACGGAAGCTTGATAAGC TAAGGAAAGCTCCATTAGTTAGTTGA
AA sequence Show only first row Show all	>Potri.010G114700.3 pacid=42797920 polypeptide=Potri.010G114700.3.p locus=Potri.010G114700 ID=Potri.010G114700.3.v4.1 annot-version=v4.1 MALSRFSSFLSRTPNNPSLLYSSSPFVLRSLVNIKNQTLSLNSTPNFENPFGSMLNPHFIVHKSTHTDLQQTVVLTDASNQTPQVLADKIVEDAENICKL LSKNPNSSVEALLNKASMEVSPSLVFEALKKLSNAGALALSFFRWAEKQKGFQYSTESYHALIESLGKIKQFNVIWNLVTDMKQKGLLNKETFALISRRY ARARKVKEAVDAFMKMEKFGLKIESSDVNRLLDTLCKSRQVERAQLVFDKMNKRGFVADIKSYTILLEGWGQEKNLSRLMEVYNEMKDEGFEPDVVTYGI LINAHCKSRRYDDAIELFHEMEAKNCKPSPHIYCTLINGLGAEKRLSEALEFFELSKASGFVPEAPTYNAVVGAYCWSERMDDVQRTIDEMRKGGVGPSA RTYDIILHHLIRAGKTKIAYSVFQKMSCEGCQPSVSTYEIIVRMFCNEDRVDMAIKVWDQMKAKGILPVMHMFSTLINSLCHESKLDEACMYFQEMLDVG IRPPAQLFSNLKQNLLDEGKKDTVVVFERKLDKLRKAPLVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71060			Tetratricopeptide repeat (TPR)...		Potri.010G114700 [exp]	0	1
AT3G15000			cobalt ion binding (.1)		Potri.011G112200 [exp]	1.00	0.9575
AT1G30010			Intron maturase, type II famil...		Potri.004G132450 [exp]	1.73	0.9538
AT3G49660		AtWDR5a	human WDR5 \(WD40 repeat\) hom...		Potri.007G009500 [exp]	2.00	0.9493
AT3G13160			Tetratricopeptide repeat (TPR)...		Potri.011G032312 [exp]	2.44	0.9440
AT2G01390		EMB3111	EMBRYO DEFECTIVE 3111, Tetratr...		Potri.005G127500 [exp]	2.44	0.9569
AT5G08510			Pentatricopeptide repeat (PPR)...		Potri.002G175900 [exp]	6.92	0.9322
AT3G22670			Pentatricopeptide repeat (PPR)...		Potri.010G084000 [exp]	7.48	0.9436
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.001G369900 [exp]	8.94	0.9351
AT3G49240		EMB1796	embryo defective 1796, Pentatr...		Potri.012G015400 [exp]	9.38	0.9217
AT5G37570			Pentatricopeptide repeat (PPR-...		Potri.006G207500 [exp]	9.74	0.9473

Compare expression of checked genes

Potri.010G114700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.