Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71070 581 / 0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G39990 373 / 5e-127 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G15050 362 / 1e-122 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G15350 358 / 3e-121 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT1G03520 353 / 2e-120 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT4G03340 352 / 7e-119 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT4G27480 351 / 8e-119 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G24040 325 / 2e-108 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G53100 318 / 1e-105 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G03690 310 / 3e-103 UNE7 unfertilized embryo sac 7, Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G128000 [exp] 733 / 0 AT1G71070 574 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.017G075600 [exp] 378 / 3e-129 AT5G15050 671 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G130300 [exp] 372 / 1e-126 AT5G15050 654 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.013G145500 [exp] 372 / 2e-126 AT1G03520 667 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.011G119600 [exp] 363 / 2e-123 AT3G15350 614 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.001G399500 [exp] 360 / 4e-122 AT3G15350 622 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.006G263000 [exp] 357 / 2e-120 AT2G37585 500 / 7e-177 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.019G104600 [exp] 353 / 4e-119 AT4G03340 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.009G003300 [exp] 338 / 2e-113 AT5G39990 447 / 1e-155 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010887 [exp] 620 / 0 AT1G71070 572 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10012710 [exp] 608 / 0 AT1G71070 561 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10032189 [exp] 387 / 1e-132 AT5G15050 648 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10014495 [exp] 384 / 2e-131 AT5G15050 649 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10023687 [exp] 365 / 6e-124 AT3G24040 491 / 2e-173 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10011765 [exp] 364 / 2e-123 AT3G24040 491 / 4e-173 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10043324 [exp] 355 / 3e-120 AT3G15350 641 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10019477 [exp] 353 / 2e-119 AT3G15350 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Lus10033714 [exp] 350 / 9e-118 AT4G03340 660 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10025339 [exp] 345 / 2e-116 AT2G37585 483 / 6e-171 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF02485 [poplar] [flax] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Potri.010G114800.3 pacid=42798462 polypeptide=Potri.010G114800.3.p locus=Potri.010G114800 ID=Potri.010G114800.3.v4.1 annot-version=v4.1 ATGGGAGCAGAGAAAAGATGGCTTTTCACTCTCTTCTCCTCAGCACTTCTTTCACTACTCTTTCTCTTAGTCTATTCAATCTCTGCTTTCAGTTCCTCTA AACAGTTCCCTTCTATAATTCACCATGGAATCCACTACCCTCCTGCTTTTGCCTATTATATCTCAGGTGGAAGGGGTGATAAGGATCGGATCCTTAGGTT ATTGCTGGCAGTTTATCACCCAAGAAACCGTTATTTATTGCATTTGGGTGCCGAGGCATCTGACGAGGAGAGAATGAAGCTTGTTGGGGCTGTAAATGCG GTGCCTGCGATTAGGAGTTTTGGGAACGTGGACGTTGTTGGGAAACCTGGAAGGCTTACCTACATGGGTTCTTCTAACCTGGCCGCGATTTTGCGTGCTG CTGCCATTTTGTTGAGGATGGATGCTGGGTGGACGTGGTTTGTGTCTTTGAGTGCAATGGATTATCCGTTGGTAACTCAGGATGACTTGTCCCATGTTTT CTCCTCTGTTAGCAGAGACCTCAATTTCATAGATCACACCAGTGACCTTGGGTGGAAAGAAGATCAAAGAATTCAGCCTATTGTAGTTGACCCTGGGATT TACCTAGCCAGGAGGAGCCAGATATTTCATGCTACAGAGAAGCGGCCAACTCCTGATGGTTTCAAAGTATTCACAGGTTCCCCGTGGGTGATCTTGAGCA GGTCATTTCTTGAATTTTGCATTCTTGGTTGGGATAATCTTCCTCGAACCCTTCTTATGTACTTCAACAATGTGGTCTTATCTGAAGAAAGCTATTTCCA CTCTGTCATTTGCAATGCACCAGAGTTTAAGAACACAACTTTAAACAGTGATCTAAGGTATATGGTCTGGGACAATCCTCCAAAGATGGAACCACATTTT CTTAATACATCTGATTATGATCTCATGGTTCAAAGTGGAGTGGCTTTTGCAAGGCAGTTTCAGAAGGATGACCCTGTGCTAGACAAGGTGGACGAGAAGA TCCTTAAGCGTGGGCATGATCGAGCTGCCCCAGGTGCATGGTGCACTGGCCGGAGGACCTGGTGGATTGATCCTTGCTCTCAATGGGGTGATGTCAATGT TGTGAAGCCAGGTCCTCAGGCTAAGAAGTTCAAGGAGACCATTAAAAACCTTCTTGATGAATGGAACTCACAGATGAATCAGTGCAAATGA
AA sequence Show only first row Show all	>Potri.010G114800.3 pacid=42798462 polypeptide=Potri.010G114800.3.p locus=Potri.010G114800 ID=Potri.010G114800.3.v4.1 annot-version=v4.1 MGAEKRWLFTLFSSALLSLLFLLVYSISAFSSSKQFPSIIHHGIHYPPAFAYYISGGRGDKDRILRLLLAVYHPRNRYLLHLGAEASDEERMKLVGAVNA VPAIRSFGNVDVVGKPGRLTYMGSSNLAAILRAAAILLRMDAGWTWFVSLSAMDYPLVTQDDLSHVFSSVSRDLNFIDHTSDLGWKEDQRIQPIVVDPGI YLARRSQIFHATEKRPTPDGFKVFTGSPWVILSRSFLEFCILGWDNLPRTLLMYFNNVVLSEESYFHSVICNAPEFKNTTLNSDLRYMVWDNPPKMEPHF LNTSDYDLMVQSGVAFARQFQKDDPVLDKVDEKILKRGHDRAAPGAWCTGRRTWWIDPCSQWGDVNVVKPGPQAKKFKETIKNLLDEWNSQMNQCK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71070			Core-2/I-branching beta-1,6-N-...		Potri.010G114800 [exp]	0	1
					Potri.013G109701 [exp]	7.07	0.8763
AT1G10280			Core-2/I-branching beta-1,6-N-...		Potri.004G228100 [exp]	16.79	0.8464
AT1G22170			Phosphoglycerate mutase family...		Potri.005G078100 [exp]	21.07	0.7830
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Potri.002G129900 [exp]	21.21	0.8416
AT2G43490			Ypt/Rab-GAP domain of gyp1p su...		Potri.017G023200 [exp]	21.44	0.8195
AT5G06200		CASP4	Casparian strip membrane domai...		Potri.016G075300 [exp]	23.81	0.7190
AT4G25120		ATSRS2	ARABIDOPSIS THALIANA SUPPRESSO...		Potri.012G114100 [exp]	27.29	0.8307
AT5G50570	SBP	SPL13, SPL13A	SQUAMOSA PROMOTER-BINDING PROT...		Potri.012G100700 [exp]	29.54	0.7652
AT5G36930			Disease resistance protein (TI...		Potri.002G056100 [exp]	36.59	0.7624
AT2G38890			unknown protein		Potri.008G044500 [exp]	37.73	0.8275

Compare expression of checked genes

Potri.010G114800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.