Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71080 286 / 9e-96 RNA polymerase II transcription elongation factor (.1) AT5G38050 195 / 1e-60 RNA polymerase II transcription elongation factor (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G127900 [exp] 446 / 8e-159 AT1G71080 285 / 1e-95 RNA polymerase II transcription elongation factor (.1) Potri.004G092200 [exp] 237 / 2e-76 AT1G71080 194 / 2e-59 RNA polymerase II transcription elongation factor (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032448 [exp] 287 / 6e-96 AT1G71080 280 / 5e-93 RNA polymerase II transcription elongation factor (.1) Lus10042948 [exp] 274 / 3e-90 AT1G71080 281 / 7e-93 RNA polymerase II transcription elongation factor (.1) Lus10009106 [exp] 202 / 7e-63 AT5G38050 196 / 4e-61 RNA polymerase II transcription elongation factor (.1) Lus10004071 [exp] 187 / 1e-59 AT1G71080 177 / 9e-56 RNA polymerase II transcription elongation factor (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09816 [poplar] [flax] EAF RNA polymerase II transcription elongation factor
Representative CDS sequence Show only first row Show all	>Potri.010G114900.1 pacid=42798261 polypeptide=Potri.010G114900.1.p locus=Potri.010G114900 ID=Potri.010G114900.1.v4.1 annot-version=v4.1 ATGGCCAACAATTCCAAAGAAGAGCCAAAAAGTGCTCCGCAACCAGATCGGTGGTACAATCTAGCCCTAGGTCCTTCATTTAAAGAGCAATCCTCCAATA AGTTCTGCACTCTGCGATACGAATTTAAGCCAGCTTCGATTGACAAAACCAAGCCTGGATTATTCCACAAGAACAAAGACAATCGAGTTTCGGTTGAGTT TCAGAACAATCAATTAGGCAAATCGAAAGTCACTTTTGAAGGTAGCAGCGAGGATTATAAAGAAAACGATGCCGTTCTGTTTTTCGATGGCCAGACTTTT CGATTGGAGCGCCTTCATCGGTCTGTTAAGCAGCTTAGGCACCTAAGATTGCCTGGTGAATCCGCTGCAGCGGCTTCTGCTCAATCTATGCTGGCTGTGG AGGCTCCCGGCTTGTCTCCTCCTGTTGGGAAGGGTGCGAAGCCTGTTCAGATTGGGCGAAGTGCATTTCCTACTGTGCCTGTTGAGGTGGAACGGATTGA TGTCGGCGAGCCACATGTTTTAGGTACAAAAGCAGCCAATGAGGGGATTACTGAGCATCCAACCCATGTACCAAATGTATCAACTTCCTCACCAAGCCCT AAGAATGATGAAGCTGAAGAACATCAAGACATAGACATCGAGGACATTTTTGGTGCTGGCTCACCTGATGATGGGAATGCAACTGAAGAAAAAGTTGATG TTGACTTTGATATGCATGCACCACAGCAAAACAACACTGATGATGAGATTGCTGATGTGGATGATAATGGTGATGAAGCAGACAAGGGTCTCAATGCTGC AGAAGCCCTTAGAGCCCAGGAGAATGCAGATGAGAGAGATGAGCAGACTTCCAGTTCTAGTAGTAGCAGTGGAAGCGGGAGCAGTGGTAGCGGGAGCAGC AGCAGCAGCAGTGACAGTGAAGGCAGTGATGAAGATTCTGTCAACTCTATTTGA
AA sequence Show only first row Show all	>Potri.010G114900.1 pacid=42798261 polypeptide=Potri.010G114900.1.p locus=Potri.010G114900 ID=Potri.010G114900.1.v4.1 annot-version=v4.1 MANNSKEEPKSAPQPDRWYNLALGPSFKEQSSNKFCTLRYEFKPASIDKTKPGLFHKNKDNRVSVEFQNNQLGKSKVTFEGSSEDYKENDAVLFFDGQTF RLERLHRSVKQLRHLRLPGESAAAASAQSMLAVEAPGLSPPVGKGAKPVQIGRSAFPTVPVEVERIDVGEPHVLGTKAANEGITEHPTHVPNVSTSSPSP KNDEAEEHQDIDIEDIFGAGSPDDGNATEEKVDVDFDMHAPQQNNTDDEIADVDDNGDEADKGLNAAEALRAQENADERDEQTSSSSSSSGSGSSGSGSS SSSSDSEGSDEDSVNSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71080			RNA polymerase II transcriptio...		Potri.010G114900 [exp]	0	1
AT5G18230			transcription regulator NOT2/N...		Potri.019G032800 [exp]	3.60	0.7023
AT2G03380			Pentatricopeptide repeat (PPR)...		Potri.010G161800 [exp]	4.89	0.6045
AT5G08139			RING/U-box superfamily protein...		Potri.012G065300 [exp]	7.61	0.6991
AT4G27000		ATRBP45C	RNA-binding (RRM/RBD/RNP motif...		Potri.001G423400 [exp]	8.12	0.6597
AT1G07470			Transcription factor IIA, alph...		Potri.009G036700 [exp]	10.24	0.6106
AT3G08590		iPGAM2	2,3-biphosphoglycerate-indepen...		Potri.006G113300 [exp]	12.64	0.5900
AT5G64560		MRS2-2, ATMGT9	magnesium transporter 9 (.1.2)		Potri.008G161400 [exp]	13.41	0.6193
AT4G16143		IMPA-2	importin alpha isoform 2 (.1.2...		Potri.010G001400 [exp]	23.00	0.5851
AT4G00660		ATRH8	RNAhelicase-like 8 (.1.2)		Potri.002G157500 [exp]	34.46	0.5878
AT1G14000		VIK	VH1-interacting kinase (.1)		Potri.008G090800 [exp]	37.12	0.5436

Compare expression of checked genes

Potri.010G114900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.