Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01320 1047 / 0 ABCG7 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) AT3G25620 299 / 2e-91 ABCG21 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) AT3G21090 298 / 1e-90 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT1G31770 288 / 3e-87 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT1G51500 279 / 1e-83 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT5G06530 280 / 2e-83 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) AT4G27420 271 / 4e-81 ABCG9 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) AT3G52310 271 / 5e-80 ABCG27 ATP-binding cassette G27, ABC-2 type transporter family protein (.1) AT1G51460 268 / 1e-79 ABCG13 ATP-binding cassette G13, ABC-2 type transporter family protein (.1) AT1G17840 265 / 2e-78 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G131900 [exp] 291 / 4e-88 AT3G25620 852 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Potri.009G051300 [exp] 290 / 1e-87 AT3G21090 943 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.016G065900 [exp] 289 / 9e-87 AT5G06530 1139 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3) Potri.019G083000 [exp] 286 / 2e-86 AT1G71960 782 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.013G111900 [exp] 285 / 3e-86 AT1G71960 795 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.004G236500 [exp] 283 / 1e-85 AT1G31770 970 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.009G051200 [exp] 283 / 5e-85 AT3G21090 1008 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.016G056700 [exp] 280 / 2e-84 AT3G21090 739 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Potri.003G046800 [exp] 279 / 8e-84 AT1G31770 945 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042949 [exp] 1043 / 0 AT2G01320 1062 / 0.0 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) Lus10032449 [exp] 1043 / 0 AT2G01320 1037 / 0.0 ATP-binding cassette G7, ABC-2 type transporter family protein (.1.2.3.4) Lus10035692 [exp] 298 / 3e-91 AT1G31770 1001 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10037283 [exp] 291 / 2e-88 AT1G31770 984 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10027354 [exp] 290 / 1e-87 AT3G21090 868 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10009959 [exp] 284 / 4e-85 AT3G21090 860 / 0.0 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) Lus10034775 [exp] 282 / 5e-85 AT1G31770 1028 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10034387 [exp] 279 / 1e-83 AT3G25620 791 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Lus10033314 [exp] 272 / 3e-82 AT1G31770 941 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10015994 [exp] 267 / 1e-79 AT5G06530 1033 / 0.0 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0181 [poplar] [flax] ABC-2 PF01061 [poplar] [flax] ABC2_membrane ABC-2 type transporter
Representative CDS sequence Show only first row Show all	>Potri.010G115000.1 pacid=42799098 polypeptide=Potri.010G115000.1.p locus=Potri.010G115000 ID=Potri.010G115000.1.v4.1 annot-version=v4.1 ATGGTGCGTTTTGGCGGGAAAATGGCGGGTCAGCTAGTGAGTTTGGGTGGGAACGGTGCCGGCCAGTTTCTGGCTGCTGCCGCAGTCGCTCTCCTCCTCC GACTGTTTTCCGGTCCCGGCCCCGCTCTGATGCCGGACGACGAGTCTCCTGACGACGAAAAAAACGACGCAGCCGACGACGATAGTCCAGATGTCGGGAA AGTTTTCCCGGTTACTATCCGGTGGAGCAACATCACATGCTCGCTCTCTGATAAATCCTCCAAATCAGTGAGATTTCTGCTTAATAATGTGAGTGGAGAA GCAAAGCCTGGAAGATTGCTTGCAATAATGGGACCATCAGGTTCAGGAAAGACAACATTGCTCAATGTTTTGGCAGGACAGCTAATGGCATCACCGCGAC TGCATTTGTCAGGTCTTTTGGAAGTCAATGGGAGGCCTAGTTCAAATAGAGCTTACAAGCTTGCTTATGTGAGACAGGAAGATCTTTTTTTCTCGCAGCT TACGGTGCGGGAAACACTGTCTCTTGCTGCTGAACTTCAACTTCCAGAGATAGCTTCGGTAGAAGAGAGAGATGAATACGTGAATAATTTGTTGTTCAAG CTCGGTTTGGCCAGCTGTGCTGATACCAATGTTGGTGATGCAAAAGTTCGTGGGATAAGTGGCGGTGAAAAGAAACGTTTGTCACTAGCATGCGAACTCA TTGCTAGCCCATCTGTAATATTTTCTGATGAACCTACAACAGGGCTTGATGCTTTTCAGGCAGAGAAAGTAATGGAAACTCTCCGACAACTGGCGCAGGA TGGACATACTGTAATTTGTTCCATACACCAGCCTAGAGGCTCAGTGTATGGTAAATTTGATGACATTGTGTTACTAGCAGAGGGTGCACTTGTCTATGCT GGCTCAGCACATGATGTGCCACTGACATATTTCTCAAAATTCGGGTATCGTTGCCCAGACCATGTCAATCCTGCTGAATTTTTGGCTGATCTCATATCCA TTGACTACAGTTCTGCAGAAAGTGTCTACTCTTCACGGAAAAGGATAGATGGTCTAGTTGAATCTTTTTCACAACAATCATCAACAATTCTTTATGCAAC TCCACTTACCAGAAAGGAGGACTCCAAGAAATTGAGCAGGAAAACTGGTGTAAAGGGGAAAGGCAAAGGGTCTTGGTGGAGGGAATTCTGGTTGCTCCTT AGACGTGCATGGATGCAGGCTTCTCGTGATGGGCCAACAAACAAAGTTCGGGCAACAATGTCAATTGCATCAGCTATAATATTTGGATCAGTTTTTTGGA GAATGGGAAAATCTCAAACATCAATACAAGATAGGATGGGATTGCTTCAGGTTGCAGCAATAAACACGGCAATGGCTGCTCTCACAAAAACAGTGGGTGT GTTTCCAAAAGAACGTGCAATTGTAGATAGAGAGCGTGCTAAGGGCTCTTATGCATTAGGACCCTATCTACTTTCCAAATTGATAGCTGAGATTCCTGTT GGAGCAGCATTTCCATTAGTGTTTGGTGCTGTACTGTATCCCATGTCTCGTCTTCACCCTACCTTTTCAAGGTTTGGAAAATTCTGTGGAATTGTGACAG CAGAGTCATTTGCTGCATCTGCAATGGGTCTAACTGTGGGAGCTATGGTTCCAACCACTGAAGCAGCAATGGCTGTCGGACCCTCTCTTATGACTGTTTT TATAGTATTCGGAGGTTATTATGTCAATGCAGATAATACACCAATCATCTTTCGATGGATTCCTAATGTTTCCCTGATAAGATGGGCCTTTCAAGGACTT TGCATCAATGAATTTAGAGGTCTTCAGTTTGATCATCAAAGTTCAATTGATGTAGAAACTGGTGAACAGGCACTTGAGCGGCTCTCGTTCGGTGGAAGAC ATATTAAGGATACTGTGGTAGCTCAAAGTAGAATTTTGTTGTTTTTGTATTGCACCACGTACCTTCTCCTTGAGAAAAACAAGCCCAGTTACCAAAGGCT TGAGCCACCGTGTCGTGAACAAATCCAGTCACAGGTACAACTTGAGCCTTTGGACCCTGACGAGGTAAAACAACTCCAGCAACTGGATCCTCCTCCACCC AAAAAAGATGAATCAAACCAGCAGCTTGAATCACCACCTGTTGAAATCCGACCATTTATCTTAGAAGGTATCAAGTAA
AA sequence Show only first row Show all	>Potri.010G115000.1 pacid=42799098 polypeptide=Potri.010G115000.1.p locus=Potri.010G115000 ID=Potri.010G115000.1.v4.1 annot-version=v4.1 MVRFGGKMAGQLVSLGGNGAGQFLAAAAVALLLRLFSGPGPALMPDDESPDDEKNDAADDDSPDVGKVFPVTIRWSNITCSLSDKSSKSVRFLLNNVSGE AKPGRLLAIMGPSGSGKTTLLNVLAGQLMASPRLHLSGLLEVNGRPSSNRAYKLAYVRQEDLFFSQLTVRETLSLAAELQLPEIASVEERDEYVNNLLFK LGLASCADTNVGDAKVRGISGGEKKRLSLACELIASPSVIFSDEPTTGLDAFQAEKVMETLRQLAQDGHTVICSIHQPRGSVYGKFDDIVLLAEGALVYA GSAHDVPLTYFSKFGYRCPDHVNPAEFLADLISIDYSSAESVYSSRKRIDGLVESFSQQSSTILYATPLTRKEDSKKLSRKTGVKGKGKGSWWREFWLLL RRAWMQASRDGPTNKVRATMSIASAIIFGSVFWRMGKSQTSIQDRMGLLQVAAINTAMAALTKTVGVFPKERAIVDRERAKGSYALGPYLLSKLIAEIPV GAAFPLVFGAVLYPMSRLHPTFSRFGKFCGIVTAESFAASAMGLTVGAMVPTTEAAMAVGPSLMTVFIVFGGYYVNADNTPIIFRWIPNVSLIRWAFQGL CINEFRGLQFDHQSSIDVETGEQALERLSFGGRHIKDTVVAQSRILLFLYCTTYLLLEKNKPSYQRLEPPCREQIQSQVQLEPLDPDEVKQLQQLDPPPP KKDESNQQLESPPVEIRPFILEGIK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01320		ABCG7	ATP-binding cassette G7, ABC-2...		Potri.010G115000 [exp]	0	1
AT5G58140		NPL1, PHOT2	NON PHOTOTROPIC HYPOCOTYL 1-LI...		Potri.004G209700 [exp]	3.87	0.9587
AT1G17650		GR2, GLYR2	glyoxylate reductase 2 (.1)		Potri.003G040800 [exp]	4.69	0.9631
AT5G49030		OVA2	ovule abortion 2, tRNA synthet...		Potri.010G014500 [exp]	6.00	0.9592
AT5G02830			Tetratricopeptide repeat (TPR)...		Potri.006G132700 [exp]	7.48	0.9581
AT3G53130		CYP97C1, LUT1	LUTEIN DEFICIENT 1, CYTOCHROME...		Potri.006G119800 [exp]	9.00	0.9596	CYP97C4
AT5G03940		SRP54CP, CPSRP5...	SIGNAL RECOGNITION PARTICLE 54...		Potri.006G211500 [exp]	9.89	0.9630	Pt-FFC.2
AT2G13440			glucose-inhibited division fam...		Potri.005G066300 [exp]	11.35	0.9409
AT4G15545			unknown protein		Potri.010G027400 [exp]	13.96	0.9501
AT5G53170		FTSH11	FTSH protease 11 (.1)		Potri.012G000700 [exp]	15.90	0.9533
AT4G32320		APX6	ascorbate peroxidase 6 (.1)		Potri.006G254500 [exp]	18.97	0.9587

Compare expression of checked genes

Potri.010G115000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.