Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71110 649 / 0 unknown protein AT2G12400 365 / 6e-120 unknown protein AT2G25270 346 / 9e-113 unknown protein AT1G80540 285 / 5e-89 unknown protein AT5G67550 62 / 5e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G258700 [exp] 385 / 1e-127 AT2G25270 590 / 0.0 unknown protein Potri.018G023200 [exp] 384 / 2e-127 AT2G25270 595 / 0.0 unknown protein Potri.006G060600 [exp] 381 / 4e-126 AT2G12400 579 / 0.0 unknown protein Potri.018G120200 [exp] 370 / 6e-122 AT2G12400 596 / 0.0 unknown protein Potri.007G132601 [exp] 126 / 6e-31 AT5G67550 189 / 8e-54 unknown protein Potri.017G023400 [exp] 119 / 2e-28 AT5G67550 182 / 3e-51 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013492 [exp] 689 / 0 AT1G71110 645 / 0.0 unknown protein Lus10034641 [exp] 639 / 0 AT1G71110 587 / 0.0 unknown protein Lus10007962 [exp] 634 / 0 AT1G71110 578 / 0.0 unknown protein Lus10035272 [exp] 429 / 2e-145 AT1G71110 503 / 2e-174 unknown protein Lus10001945 [exp] 392 / 2e-130 AT2G25270 650 / 0.0 unknown protein Lus10008028 [exp] 362 / 5e-119 AT2G12400 641 / 0.0 unknown protein Lus10008813 [exp] 355 / 4e-116 AT2G12400 616 / 0.0 unknown protein Lus10014341 [exp] 245 / 4e-74 AT2G25270 352 / 7e-116 unknown protein Lus10001929 [exp] 243 / 6e-73 AT2G25270 457 / 3e-156 unknown protein Lus10026050 [exp] 228 / 2e-68 AT2G25270 328 / 4e-107 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.010G115500.1 pacid=42799599 polypeptide=Potri.010G115500.1.p locus=Potri.010G115500 ID=Potri.010G115500.1.v4.1 annot-version=v4.1 ATGAAGATGTTCCTGGTTCCAAGATTTGGTTTCTTGTTTCTTGTTGTTTCTTTGAGCTGCTCTGTTTTAGCTCTGCCTGGAAATGGGCCTGCTAAAGATC CTCTCAAGTATATCTTAGGGCAGGATAATTTAGGGCCATTTAGAAATGGAATCTCGGAGACTGCTGCACGAGCACCTGGGCCTTCTGATTACGGGTCTAA TAACACACTTGTGTTGGCGGCGAAGAGGACGGATCGACCGGACATTCTTCACGGATTTAAGCATTATCGAGGAGGTTGGAACATCACCGATCCCCATTAC TGGGCTTCTGTTGGCTTCACAGGTGCTGCTGGTTTTATTCTGGCTTTCCTGTGGTTTTTTTTGTTTGGCTTTGCCCTTGTAGCACATCATTGCTTCAAAT GGAGAATTAACATTAAAGACAAAGGATCAAGCCGATCTCAAAGGATTTCTCTTATAATGCTTATACTGTTCACTTGTGCTGCAGCGATTGGATGTATCCT TCTCTGTGTTGGGCAGGATGACTTTCACGGTGAAGCTATGAATACTCTGAAATATGTTGTAAACCAGTCAGACTACACTGTGCAAACCCTGAAAAATGTT ACGGAGTATCTATCCCTTGCGAAGACCATCAATATAGCCCAGCTTGTCCTTCCTTCTAACGTCATGGATGATATTGACAAGTTGAATGTGGATCTCAATG CTGCCGCTGATACACTGACAGAGAAGACTAGTGAAAATGCTGGAAAAATAGTGAAAGTATTCAATGCTGTGCGGTCAGCATTGATTACTGTGGCTGCAGT GATGCTTATCCTGGCTCTGCTTGGTTTTTTGCTGTCTATCCTTGGACATCAACATGCAATTCATATATTTGTAGTGAGTGGGTGGTTGTTAGTGGCGGTT ACCTTCATTCTTTGTGGAGTTTTTATTCTTCTCAACAATGCGATTTCTGACACCTGTTTGGCCATGGAAGAATGGGTGGAAAATCCCCATGCAGCATCTG CTCTTAGCAGCATTCTTCCTTGTGTTGACCAAAGAACAACAAACAACACACTCGTCCAGAGTAAAGAAGTCATCACTGATATTGTAAATGTTGTCAATAC CTATATATACACATTTGCAAATGCAAATCCATCCCAGACCGAGTTTAATTATTATAACCAATCTGGACCTTCCATGCCTCCTTTGTGCTACCCATTTGAC TCGCTTTATCAAGATCGTCAATGCGAGCCCCGAGAGGTGTCTATGGCAAATGCATCTGTGGTTTGGCAGAACTACACCTGCATGGTTTCATCATCTGGGC TGTGCACAACTGTTGGTAGGGTGATCCCTGACATCTATAGACAATTGGTGGCAGCAGTTAACGAAAGCTATGCTCTTGAGTACTACACCCCGGTTTTGCT CAGCCTCCAGGATTGCAAGTTTGTCAGGGACACATTCCTAGAAATCACCTCGAGTCATTGCCCTCAATTGGAGCATTATCTCAAGATTGTAAATGCGGGG CTGGGCTTGATCTCAGTAGGAGTTTTGCTGTGTCTCGTTCTCTGGATACTATATGCAAGCTGCCCCCTAAGTGAGGAAGTGTTTGCGAAGATATCCTCGC CAATAAAATGCAGCAGTGGCTGTACAGGTGTTAAGATAGGTTCTACAAGTAGTGGCAAGAATGATGCATCGTTGTCGATTACAAGTGTAGTGTAG
AA sequence Show only first row Show all	>Potri.010G115500.1 pacid=42799599 polypeptide=Potri.010G115500.1.p locus=Potri.010G115500 ID=Potri.010G115500.1.v4.1 annot-version=v4.1 MKMFLVPRFGFLFLVVSLSCSVLALPGNGPAKDPLKYILGQDNLGPFRNGISETAARAPGPSDYGSNNTLVLAAKRTDRPDILHGFKHYRGGWNITDPHY WASVGFTGAAGFILAFLWFFLFGFALVAHHCFKWRINIKDKGSSRSQRISLIMLILFTCAAAIGCILLCVGQDDFHGEAMNTLKYVVNQSDYTVQTLKNV TEYLSLAKTINIAQLVLPSNVMDDIDKLNVDLNAAADTLTEKTSENAGKIVKVFNAVRSALITVAAVMLILALLGFLLSILGHQHAIHIFVVSGWLLVAV TFILCGVFILLNNAISDTCLAMEEWVENPHAASALSSILPCVDQRTTNNTLVQSKEVITDIVNVVNTYIYTFANANPSQTEFNYYNQSGPSMPPLCYPFD SLYQDRQCEPREVSMANASVVWQNYTCMVSSSGLCTTVGRVIPDIYRQLVAAVNESYALEYYTPVLLSLQDCKFVRDTFLEITSSHCPQLEHYLKIVNAG LGLISVGVLLCLVLWILYASCPLSEEVFAKISSPIKCSSGCTGVKIGSTSSGKNDASLSITSVV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71110			unknown protein		Potri.010G115500 [exp]	0	1
AT3G14940		ATPPC3	phosphoenolpyruvate carboxylas...		Potri.011G110700 [exp]	14.07	0.8168	PEPC.2
AT1G47670			Transmembrane amino acid trans...		Potri.014G036500 [exp]	23.55	0.8239
AT1G68410			Protein phosphatase 2C family ...		Potri.008G123600 [exp]	26.83	0.8089
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.013G082200 [exp]	35.49	0.8075	CESA3.1
AT3G56370			Leucine-rich repeat protein ki...		Potri.013G091000 [exp]	37.50	0.8150
AT5G51560			Leucine-rich repeat protein ki...		Potri.012G128700 [exp]	44.72	0.8147
AT1G21090			Cupredoxin superfamily protein...		Potri.002G067600 [exp]	51.69	0.8009
AT5G13000		CALS3, ATGSL12	callose synthase 3, glucan syn...		Potri.001G012200 [exp]	58.60	0.8060	Pt-CALS1.3
AT3G21620			ERD (early-responsive to dehyd...		Potri.002G226800 [exp]	65.93	0.7950
AT5G64080		AtXYP1	xylogen protein 1, Bifunctiona...		Potri.003G020200 [exp]	67.49	0.8002

Compare expression of checked genes

Potri.010G115500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.