Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01275 248 / 1e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G38070 178 / 3e-55 RING/FYVE/PHD zinc finger superfamily protein (.1) AT2G02960 165 / 7e-50 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) AT3G47550 157 / 1e-46 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) AT5G62460 154 / 2e-45 RING/FYVE/PHD zinc finger superfamily protein (.1) AT1G14260 147 / 7e-43 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT1G02610 130 / 5e-37 RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G02075 111 / 1e-29 PIT1 pitchoun 1, RING/FYVE/PHD zinc finger superfamily protein (.1) AT4G32670 55 / 2e-08 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G03180 54 / 4e-08 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G127400 [exp] 469 / 8e-170 AT2G01275 266 / 1e-89 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.004G093500 [exp] 287 / 6e-98 AT2G01275 238 / 9e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.017G122300 [exp] 256 / 4e-86 AT2G01275 246 / 4e-82 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.010G169200 [exp] 174 / 2e-53 AT3G47550 253 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Potri.008G086300 [exp] 172 / 1e-52 AT2G02960 252 / 9e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.014G121900 [exp] 142 / 2e-41 AT1G02610 181 / 2e-57 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.002G196600 [exp] 125 / 3e-35 AT1G02610 183 / 2e-58 RING/FYVE/PHD zinc finger superfamily protein (.1) Potri.019G111700 [exp] 126 / 4e-35 AT2G02960 156 / 1e-46 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Potri.013G126600 [exp] 126 / 4e-35 AT2G02960 159 / 9e-48 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034640 [exp] 314 / 5e-108 AT2G01275 202 / 3e-64 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10035271 [exp] 296 / 4e-101 AT2G01275 240 / 2e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10004058 [exp] 283 / 2e-96 AT2G01275 251 / 6e-84 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Lus10002282 [exp] 249 / 6e-83 AT5G38070 219 / 6e-71 RING/FYVE/PHD zinc finger superfamily protein (.1) Lus10013491 [exp] 254 / 2e-81 AT5G13240 299 / 1e-99 transcription regulators (.1) Lus10012826 [exp] 165 / 1e-49 AT2G02960 310 / 2e-106 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10021670 [exp] 160 / 2e-47 AT3G47550 275 / 7e-92 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10037172 [exp] 152 / 1e-44 AT2G02960 303 / 5e-104 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5) Lus10019102 [exp] 151 / 3e-44 AT3G47550 295 / 5e-100 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.6) Lus10030472 [exp] 151 / 5e-44 AT2G02960 221 / 4e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12428 [poplar] [flax] DUF3675 Protein of unknown function (DUF3675) CL0229 [poplar] [flax] RING PF12906 [poplar] [flax] RINGv RING-variant domain
Representative CDS sequence Show only first row Show all	>Potri.010G115600.3 pacid=42799199 polypeptide=Potri.010G115600.3.p locus=Potri.010G115600 ID=Potri.010G115600.3.v4.1 annot-version=v4.1 ATGGGGGATCACTTTGTATTGCTGGTGAATCGTTTGATAACTGAATCCACCTTAGAAGCTGCAATTGAGAGCAGAAACCTGTCGATGCAAGCCACAGCGT CTGACACAAAAATTGATAAATCTTTCCAGAAACTGGATTTTGGGGATATATCAACTCCGAGGAAATTGGTGGAGTGCAGGATATGCCAGGATGAGGATGA AGATTCTAATATGGAGACACCATGTTCTTGTTGTGGTAGTTTGAAGTATGCTCATCGCAGGTGTATACAGAGGTGGTGTAATGAGAAGGGGAACACTATA TGTGAGATATGCCTCCAGGAGTTCAAGCCTGGTTATACAGCACCACCACCCCTGTTCCAAATTGGGTTTCCAATGAACTTTAGGGGAAATTGGGAGACGT CTAGAAGGGAGTTAAATGGTCCTCGCTTCATAGCAGTGGTCTCATCTGAACATAACTTCCTGAATACTGACTATTATGAGTATTCAGCTTCAACTACAAG AAACACAATCTACTGTCGCTTGATTGCTGTGATTTTCATGGTTCTTTTAATTCTAAGGCACACTCTTCCTCTCATTCTTAATGGAACCAACAATTTCTCA TTCCCAGTGTTTATGTTGTTATTTCTACGAATTGCTGGGATTATTCTTCCAATCTATGTCATGTTAAAAGCACTAACTGCTCTCCAGCGTCGCCGCCTCC ATCAGGCGCCTCCAAATTCATCAATTCATTCATATGATGAAGATGCTGAGCATTCAACCCTGCAGCCTCGGCCACATATAATAAATGTTCATTAG
AA sequence Show only first row Show all	>Potri.010G115600.3 pacid=42799199 polypeptide=Potri.010G115600.3.p locus=Potri.010G115600 ID=Potri.010G115600.3.v4.1 annot-version=v4.1 MGDHFVLLVNRLITESTLEAAIESRNLSMQATASDTKIDKSFQKLDFGDISTPRKLVECRICQDEDEDSNMETPCSCCGSLKYAHRRCIQRWCNEKGNTI CEICLQEFKPGYTAPPPLFQIGFPMNFRGNWETSRRELNGPRFIAVVSSEHNFLNTDYYEYSASTTRNTIYCRLIAVIFMVLLILRHTLPLILNGTNNFS FPVFMLLFLRIAGIILPIYVMLKALTALQRRRLHQAPPNSSIHSYDEDAEHSTLQPRPHIINVH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01275			RING/FYVE/PHD zinc finger supe...		Potri.010G115600 [exp]	0	1
AT1G73760			RING/U-box superfamily protein...		Potri.015G043900 [exp]	2.23	0.7747
AT5G48160		OBE2	OBERON2, Protein of unknown fu...		Potri.014G164800 [exp]	6.24	0.6589
AT5G61280			Remorin family protein (.1)		Potri.015G049700 [exp]	7.74	0.7332
AT2G28710	C2H2ZnF		C2H2-type zinc finger family p...		Potri.010G209400 [exp]	9.79	0.7280
AT2G23770			protein kinase family protein ...		Potri.005G128200 [exp]	13.03	0.7636
AT2G41690	HSF	AT-HSFB3, HSFB3	HEAT SHOCK TRANSCRIPTION FACTO...		Potri.016G056500 [exp]	15.09	0.7073	HSFB3.2
AT2G28710	C2H2ZnF		C2H2-type zinc finger family p...		Potri.008G051200 [exp]	16.34	0.7528
AT4G30630			unknown protein		Potri.006G183000 [exp]	20.78	0.6745
AT5G58190		ECT10	evolutionarily conserved C-ter...		Potri.018G149800 [exp]	22.51	0.6980
AT4G33420			Peroxidase superfamily protein...		Potri.018G136900 [exp]	25.19	0.7287

Compare expression of checked genes

Potri.010G115600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.