Plant FIBer expression Database

Potri.010G115900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G122100
[exp]
91 / 3e-24 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.010G115900.1 pacid=42798205 polypeptide=Potri.010G115900.1.p locus=Potri.010G115900 ID=Potri.010G115900.1.v4.1 annot-version=v4.1
ATGGCTTCCTCTCACCCACCTACCAGTTGCTCGAGTCCTCCCTTTCGCAGGCACAAGGAACTGATCACTTCCAAGCATCCCCGAGTAATTAGATGCCAGA
GCTTTCGAGAAGATGTTTTGAAACCGTGGTTGGCAGGAACATCTGCAAATATCGTTGATGCAAATCTGGGCATTCTAAGAGGCAGAATAGCAGAAGTAAA
GATGAAGGAGAAGTTGGACGCATGGTGCAGACTAAAAAATGACTGGAATTATCAGTCTGGTTATGATCACAAATACAAGAGAGATGCTATGTTATCCGAG
TCTTTAGAAATTATGGGGTTTGCGAGCGGTGCACTTGGGTTCGTCTTTCTTTCCGGCTCTCTTTGCATCTGGCTTGTTTCTCTTCTAGTTCATTTGACTC
GATGA
AA sequence
>Potri.010G115900.1 pacid=42798205 polypeptide=Potri.010G115900.1.p locus=Potri.010G115900 ID=Potri.010G115900.1.v4.1 annot-version=v4.1
MASSHPPTSCSSPPFRRHKELITSKHPRVIRCQSFREDVLKPWLAGTSANIVDANLGILRGRIAEVKMKEKLDAWCRLKNDWNYQSGYDHKYKRDAMLSE
SLEIMGFASGALGFVFLSGSLCIWLVSLLVHLTR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.010G115900
[exp]
0 1
AT5G38760 Late embryogenesis abundant pr... Potri.004G107900
[exp]
2.64 0.9748
AT5G50720 ATHVA22E ARABIDOPSIS THALIANA HVA22 HOM... Potri.015G099700
[exp]
3.87 0.9428
AT3G22600 Bifunctional inhibitor/lipid-t... Potri.010G085300
[exp]
4.24 0.9746
AT4G03540 Uncharacterised protein family... Potri.004G043300
[exp]
4.89 0.9677
AT4G08570 Heavy metal transport/detoxifi... Potri.002G092200
[exp]
6.70 0.9638
AT2G38905 Low temperature and salt respo... Potri.008G044300
[exp]
10.81 0.9180
AT2G25890 Oleosin family protein (.1) Potri.006G234900
[exp]
10.95 0.8715
AT2G42560 late embryogenesis abundant do... Potri.019G090300
[exp]
11.48 0.9511
AT5G50400 ATPAP27, PAP27 ARABIDOPSIS THALIANA PURPLE AC... Potri.003G202200
[exp]
12.48 0.9615
AT1G07430 HAI2 highly ABA-induced PP2C gene 2... Potri.001G092100
[exp]
13.19 0.8781

Potri.010G115900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.