Plant FIBer expression Database

Potri.010G116200 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007957
[exp]
606 / 0 AT3G04240 47 / 3e-05 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Lus10003576
[exp]
44 / 0.0004 AT3G04240 1606 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF13414 TPR_11 TPR repeat
CL0021 OB PF16669 TTC5_OB Tetratricopeptide repeat protein 5 OB fold domain
Representative CDS sequence
>Potri.010G116200.1 pacid=42796805 polypeptide=Potri.010G116200.1.p locus=Potri.010G116200 ID=Potri.010G116200.1.v4.1 annot-version=v4.1
ATGGGGGAGAGAAAGATGAGCAGCGGCAGCAGGCTAGTGAGAGAAGGAGAAGGAGAAGGAGAAGAAGGAGAAGATATATGGGCAAAAGCCACAAAAGCAG
CAGATGATCTCTACATTCTGAGGGACACATATTTCCCACCAAACCCACTTGACAAAATCTCCAAATTACAATCCCAATCCGATCTCTCTCTCAACCTCCT
CGATTCCATTCCTCTTGAATATAGGAAATCACCTGTGCAACGAGCGACATATGAATATCTGAGAGGCAAGTTGTTAGATGTAGTACCTGAATACAACAAA
GAAGCTGAGGACCACCTCTCTAAAGCTGTTAAGTTGAATCCATCACTTGCAGATGCTTGGCTGTGTTTGGGAAACTGCATCTGGAAGAAGGGAGATTTAC
CTTCAGCAAAAAATTGCTTCAATCTTGCACTAAGTAAGGGGGCAAACAAGAAGATACTTTGTCTGTTATCAATGCTTGAAAGAAGAATGGCCCAAGGTTC
TGAAAATCAGGCACAAATTGTTGAGGAAAGCATTCAACATGCCAAGGATGCGATCACTTTGGATGTCAAGGATGGAAACTCTTGGTACAACCTTGGAAAT
GCATGCTTGACAAGTTTTTTTGTGACTGGGGCATGGGATCACAGCAAGCTCCTACAGTCTTTAAAAGCATACCAAAATGCCGAGAAAGATGAGAGGATGA
AGTCCAATCCAGACCTATATTTCAACTGTGCCACTGTAAACCGCTATCTAGAGAATTATGAAAGGGCCCTTAGTGGGTTTGAAGCTGCTGCCTTAAAGGA
TCCTAGTCTCAATGCTACCGAGGAGGTTCAAAAGATGGTTAATCTTCTTGATAATTTGGAGAATCTGTTGAGGGGCCAGGCTAGAACTAAACGACTTGCT
TCTTTGGCATCATCTCTAGCTGCTGTTAAATTGAATTCTTCGTATAAAAGAGCCTCTGTAGATCAGTTGTCAGAGGGCCTGAACAGAGCAGTAGCAATAG
TGGGAAAAGTGCTTTTCTTTGTCAAGCAAGAGAATGCCACTCCCCTATACTATTTGGTGTGTGATTCTAATCAAATATGCTTTGTTCTATCAGTGTATGG
GATGCGCAATGATGCAATAAAAGAAGGAGATCAGCTAACACTTTTAGAGCCTTATTACCATTATGTTGATTTTTCTTGGAAGGGAAAGCATTACAATTTC
AAATCAGTTCGTGTGGATTTCACAGAGCAAGTTCTTGTGAATGGAAAAGTTCTCTCTTCTCATCATGCTGTTCGTTCATCAATTTATGCTCAACATAAAC
CATGA
AA sequence
>Potri.010G116200.1 pacid=42796805 polypeptide=Potri.010G116200.1.p locus=Potri.010G116200 ID=Potri.010G116200.1.v4.1 annot-version=v4.1
MGERKMSSGSRLVREGEGEGEEGEDIWAKATKAADDLYILRDTYFPPNPLDKISKLQSQSDLSLNLLDSIPLEYRKSPVQRATYEYLRGKLLDVVPEYNK
EAEDHLSKAVKLNPSLADAWLCLGNCIWKKGDLPSAKNCFNLALSKGANKKILCLLSMLERRMAQGSENQAQIVEESIQHAKDAITLDVKDGNSWYNLGN
ACLTSFFVTGAWDHSKLLQSLKAYQNAEKDERMKSNPDLYFNCATVNRYLENYERALSGFEAAALKDPSLNATEEVQKMVNLLDNLENLLRGQARTKRLA
SLASSLAAVKLNSSYKRASVDQLSEGLNRAVAIVGKVLFFVKQENATPLYYLVCDSNQICFVLSVYGMRNDAIKEGDQLTLLEPYYHYVDFSWKGKHYNF
KSVRVDFTEQVLVNGKVLSSHHAVRSSIYAQHKP

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.010G116200
[exp]
0 1
AT3G55530 SDIR1 SALT- AND DROUGHT-INDUCED RING... Potri.009G034700
[exp]
2.23 0.8634
AT4G31860 Protein phosphatase 2C family ... Potri.003G183800
[exp]
3.74 0.8103
AT2G05630 ATG8D Ubiquitin-like superfamily pro... Potri.002G228800
[exp]
4.89 0.8617
AT2G45200 ATGOS12, GOS12 golgi snare 12 (.1.2) Potri.002G145200
[exp]
5.91 0.8373
AT3G56850 bZIP DPBF3, AREB3 ABA-responsive element binding... Potri.001G220700
[exp]
6.00 0.8440
AT2G46550 unknown protein Potri.005G071400
[exp]
19.89 0.8274
AT5G22400 Rho GTPase activating protein ... Potri.016G078200
[exp]
25.23 0.7602
AT1G24120 ARL1 ARG1-like 1 (.1) Potri.010G036200
[exp]
25.74 0.8139
AT4G27745 Yippee family putative zinc-bi... Potri.015G009200
[exp]
26.32 0.8227
AT4G21980 ATG8A, APG8A AUTOPHAGY-RELATED 8A, AUTOPHAG... Potri.011G004300
[exp]
31.98 0.7572

Potri.010G116200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.