Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24910 376 / 3e-125 ELA1, CYP714A1 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) AT5G24900 352 / 5e-116 ELA2, CYP714A2 EUI-like p450 A2, cytochrome P450, family 714, subfamily A, polypeptide 2 (.1) AT2G26710 270 / 2e-84 CYP72B1, CYP734A1, BAS1 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) AT5G52400 268 / 9e-84 CYP715A1 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) AT3G14620 253 / 7e-78 CYP72A8 "cytochrome P450, family 72, subfamily A, polypeptide 8", cytochrome P450, family 72, subfamily A, polypeptide 8 (.1) AT3G14690 249 / 1e-76 CYP72A15 "cytochrome P450, family 72, subfamily A, polypeptide 15", cytochrome P450, family 72, subfamily A, polypeptide 15 (.1) AT3G14640 249 / 2e-76 CYP72A10 "cytochrome P450, family 72, subfamily A, polypeptide 10", cytochrome P450, family 72, subfamily A, polypeptide 10 (.1) AT4G27710 248 / 7e-76 CYP709B3 "cytochrome P450, family 709, subfamily B, polypeptide 3", cytochrome P450, family 709, subfamily B, polypeptide 3 (.1) AT3G14680 247 / 1e-75 CYP72A14 "cytochrome P450, family 72, subfamily A, polypeptide 14", cytochrome P450, family 72, subfamily A, polypeptide 14 (.1) AT5G38450 244 / 2e-74 CYP735A1 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G026200 [exp] 489 / 1e-169 AT5G24910 488 / 8e-169 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.008G026300 [exp] 486 / 9e-169 AT5G24910 486 / 5e-168 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.013G160800 [exp] 469 / 4e-162 AT5G24910 468 / 6e-161 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.019G064200 [exp] 391 / 2e-131 AT5G24910 652 / 0.0 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.015G145100 [exp] 276 / 2e-86 AT5G52400 646 / 0.0 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) Potri.006G154500 [exp] 275 / 5e-86 AT2G26710 789 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Potri.012G142000 [exp] 272 / 3e-85 AT5G52400 622 / 0.0 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) Potri.014G052000 [exp] 260 / 2e-83 AT5G24910 241 / 4e-76 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Potri.004G100400 [exp] 265 / 2e-82 AT5G38450 734 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10008423 [exp] 409 / 3e-138 AT5G24910 462 / 9e-159 EUI-like p450 A1, cytochrome P450, family 714, subfamily A, polypeptide 1 (.1) Lus10039234 [exp] 283 / 3e-89 AT5G52400 653 / 0.0 "cytochrome P450, family 715, subfamily A, polypeptide 1", cytochrome P450, family 715, subfamily A, polypeptide 1 (.1) Lus10033044 [exp] 271 / 2e-84 AT2G26710 803 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10033555 [exp] 259 / 5e-80 AT5G38450 694 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Lus10017595 [exp] 259 / 6e-80 AT5G38450 697 / 0.0 "cytochrome P450, family 735, subfamily A, polypeptide 1", cytochrome P450, family 735, subfamily A, polypeptide 1 (.1) Lus10026085 [exp] 255 / 2e-78 AT2G46960 375 / 6e-125 "cytochrome P450, family 709, subfamily B, polypeptide 1", cytochrome P450, family 709, subfamily B, polypeptide 1 (.1.2) Lus10025756 [exp] 252 / 3e-77 AT2G46950 578 / 0.0 "cytochrome P450, family 709, subfamily B, polypeptide 2", cytochrome P450, family 709, subfamily B, polypeptide 2 (.1) Lus10017771 [exp] 246 / 3e-75 AT2G26710 705 / 0.0 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10026084 [exp] 245 / 8e-75 AT2G26710 375 / 6e-125 PHYB ACTIVATION TAGGED SUPPRESSOR 1, Cytochrome P450 superfamily protein (.1) Lus10025755 [exp] 256 / 1e-74 AT1G80300 923 / 0.0 nucleotide transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.010G116300.1 pacid=42797803 polypeptide=Potri.010G116300.1.p locus=Potri.010G116300 ID=Potri.010G116300.1.v4.1 annot-version=v4.1 ATGGAAGGGTTCCCCATCTCCTACAATTTCACTTGTCTTGTTTTGCTTCTGACATGGAGCTTGATCGTTTATCTCTACTACTCTTTCTGGTGGAGGCCCG AGCTAAGGCTTAGAAAGCAAGGAATCAGAGGTCCCCCGCCTAATTTTCTACTGGGAAACATTCCAGAAATTAAGCAAGCTACAGTTCAGAATAGAAGTGA AAGTACTCCAAGCATGGAAAGCGACAGTTTTTCAGGTTTCCCAAGTTTCAAGCAGTGGTGCAAGAAATATGGTAACACGTACATGTTTAAACTTGGGGCG TTGCACTTCTTGTATGCCACTAATCCGTTCATGGTGAAGGAAATAAAACTCTTTAGATCGTTGGACCTGGGAAAACCTGCTTATCTACAGAAGGACAGGG GAGTTCTGTTAGGCAAAGGCGTTATTACATCAAATGGACCGGCTTGGTCTCACCAGAGAAAGATTTTAAGCCCCCAGCTCTATGTGGACAAGGATACTTT GAATATAATTGTTGAATCTGGTATCACTGTGATTAAATCATGGGAAAGAATATTAATGGAATCCAAGGATGGATTAGATGCAGATATCATGGTGGATAGC CACATGAGAAGCTTCACCTCCTGCATAATCTCAAAGCTTATGTTCGGGCATGATCATTGTAGAGGAATGAACGTAACTGCAAGGTGTCACACTCTTTTTA AGGCAATGGGAACACCAACGACAATTGGGATTCCATTCTTGAGATATCTTCCTACTAAAGCAAATAGAAATGCTTGGAGATTGGCAAAGGAGATCCATTC GATGATTTTGGACATAGCCAAGAACCGCTGTGGATCTAGCACAACTAAGGACATATTGCAAGTGATCTTGGAAGGTTCCGAAAATGGTGGGCCTGGTCCA TCAAGTGCTCATGAGTTCATAGTTGATAACTGCAAGGATATGTTGCTCGCTGCCTCTGAGGGGACTGCTATTTCTGCAATGTGGGGTTTAATGCTATTAG CTTCAAATCCTGAATGGCAAGCTCGTGCCCGGTCCGAAGTTAAGCAAGTCTGTGGTGGTCATCTCCCGAATTTCAATATGCTTGGCAAGATGAAAGTGTT AAAGATGGTGATATTAGAGGTGCTCAGGCTTTACCCGCCAGTGGCGTTGGTATCAAGGCGAGCCCTGCAAGATGTGAAGCTTTGTAATATGCAGGTTCCA AAAGGTGTAAACATTTGGATATGGGCACCAGCATTGCACCGCGACCCTGACCTTTGGGGGCCTGACGCGGACAAGTTCAATCCTGAAAGGTTCATTGACG GAGTTTCAGGTGCATGCAAGTCTTCACATGCCTATATACCTTTCGGAGTTGGGGCTCGGCTGTGTCCCGGCAATAAATTAGGGATGATACAATTGAAAGT CTTGCTTGCTATGATCTTATCCAGTTTCAATCTTAGCATCTCCCCAAACTATCGTCACTCCCCTACCTTGGGTTTGCTTTTGGAGCCCGAGCACGGTGTT AATCTTGTCATTCAGAAGATATGA
AA sequence Show only first row Show all	>Potri.010G116300.1 pacid=42797803 polypeptide=Potri.010G116300.1.p locus=Potri.010G116300 ID=Potri.010G116300.1.v4.1 annot-version=v4.1 MEGFPISYNFTCLVLLLTWSLIVYLYYSFWWRPELRLRKQGIRGPPPNFLLGNIPEIKQATVQNRSESTPSMESDSFSGFPSFKQWCKKYGNTYMFKLGA LHFLYATNPFMVKEIKLFRSLDLGKPAYLQKDRGVLLGKGVITSNGPAWSHQRKILSPQLYVDKDTLNIIVESGITVIKSWERILMESKDGLDADIMVDS HMRSFTSCIISKLMFGHDHCRGMNVTARCHTLFKAMGTPTTIGIPFLRYLPTKANRNAWRLAKEIHSMILDIAKNRCGSSTTKDILQVILEGSENGGPGP SSAHEFIVDNCKDMLLAASEGTAISAMWGLMLLASNPEWQARARSEVKQVCGGHLPNFNMLGKMKVLKMVILEVLRLYPPVALVSRRALQDVKLCNMQVP KGVNIWIWAPALHRDPDLWGPDADKFNPERFIDGVSGACKSSHAYIPFGVGARLCPGNKLGMIQLKVLLAMILSSFNLSISPNYRHSPTLGLLLEPEHGV NLVIQKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G24910		ELA1, CYP714A1	EUI-like p450 A1, cytochrome P...		Potri.010G116300 [exp]	0	1
AT5G63380			AMP-dependent synthetase and l...		Potri.017G033600 [exp]	4.12	0.7105
AT4G24340			Phosphorylase superfamily prot...		Potri.013G100800 [exp]	5.83	0.7006
AT4G24340			Phosphorylase superfamily prot...		Potri.013G100700 [exp]	11.18	0.6677
AT1G54200			unknown protein		Potri.001G170500 [exp]	12.48	0.6506
AT3G62930			Thioredoxin superfamily protei...		Potri.002G208700 [exp]	14.14	0.6231	PtrGrx20
AT1G21280			unknown protein		Potri.013G016350 [exp]	15.49	0.6493
AT1G30840		ATPUP4	purine permease 4 (.1.2)		Potri.003G156900 [exp]	17.49	0.6314
					Potri.006G183466 [exp]	21.35	0.6159
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.007G139400 [exp]	22.22	0.6159
AT1G19715			Mannose-binding lectin superfa...		Potri.005G232500 [exp]	22.80	0.6785

Compare expression of checked genes

Potri.010G116300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.