Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15130 1080 / 0 Endosomal targeting BRO1-like domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G126900 [exp] 1318 / 0 AT1G15130 1165 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034634 [exp] 1106 / 0 AT1G15130 1113 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10035265 [exp] 825 / 0 AT1G15130 836 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03097 [poplar] [flax] BRO1 BRO1-like domain PF13949 [poplar] [flax] ALIX_LYPXL_bnd ALIX V-shaped domain binding to HIV
Representative CDS sequence Show only first row Show all	>Potri.010G116400.1 pacid=42797884 polypeptide=Potri.010G116400.1.p locus=Potri.010G116400 ID=Potri.010G116400.1.v4.1 annot-version=v4.1 ATGCTAGCAATTTACGAGAAAAAAACAACCTCCCTCGACCTCTACCGTCCTCTCCGCAACTACATTGCCATGTTCTACTCCGAACGCGAAGCCCAAAACC TCGAAGATGATCTCCAAACCGTCAAACAATACCGTTCCGATCTCGAGCGCCAACCCGACCCGTCACCTACTTCCCGCCGCGACCTCCTCCAAAAATACTT CAAAGCCCTCTGCTTGATCGAAACCCGATTCCCAATCTCCCCCGACAATGACCACATCAATTCGGTCACTTTTGTCTGGTACGATGCGTTTAAGCAAAAA CAGAAAGCGTCGCAGCAGAATATTCATTTAGAGAAGGCTGCTGCCCTTTTTAATTTGGGTGCCGTTTATAGTCAGATTGGATTGTCGTTTGATCGGGCCA CGGTGGAGGGGAGGAGACAGACGATTCATGCCTTTATTGCTGCCGCCGGTGCGTTTGCTTATTTGAGAGATAATGCGGCCGCGAAAGCCTCTGTGGGTAC CAGTACTACGGTTGATGTGTCGGTTGAGTGTGTTGGGATGTTAGAGAGATTGATGCTCGCACAAGCGCAAGAGTGTGTCTTCGAGAATACTATTTCTAAA GGGAGCACCCCGGGTGTTTGTGCCAAGATTTCTCGGCAGGTTGGGTTGTACTATGAGGAAGCTTTAGCAGCACTGAATGTTGCACCTCTAAAAGATAATT TTGACAAGGGTTGGACTGCTCATGTCCAACTAAAAGCAGCCCTGTTCTACGCAGAAGCTTGTTTTTGGTATAGTTTGGAGCTTCATGAGAAAGAAGAAAT TGCAGAGGAAATTGCACGGTTGAAGAGCGGGGCTAGTACATTAGCAGAGGCAAAGAAAAGTTCAAAGGGGGCTGCAGTACAGCTTCTGGATGCAATTAGC AAGCTGGAAGCCAATATCAACCGCAACCTGGACAGGGCTGTCAAGGAAAATGATAGAGTTTACCTCATGAGGGTTCCTTCCCCAAGTTTCTTACCCCCTC TACCAGCATTTTCCATGGTAAAGACCATGCCAATGAATGAGGTACTTGATGCCAGCAAGGAGAAGATGTTTGCTAGTCTTGTTCCAGACAGCAGCGCAAA AGCTCTTTCAAGGTACACTGAAATGGTTGACAATATTATCCGGACACAGGCTGAAAAATTGCAACAAGGGAGTGAGCTAACTCGAGTGAGGCTCAAAGAA ATGGACCTGCCAGATTCTATTCTTTCTTTGGAAGGAAATTTTTCACTTCCAACAGATCTTAAAGAAGATGTAGAAGCAGTGCAGATTAGTCAGGGCCCAG CTGGCCTTGAAGCTGAGTTACAGCAACTTATGGATTTGAGGAGGGTTAACCAAGAATTGCTGGTCCAGACTGAGGAGCTTTTGCAAAAGGAAGCAACAGA GGATTCCCAGTTTAGAAGCCAATTTGGGACACAGTGGACTAGGCCTCAATCCAGCACTTTGACAAAGAACTTGCAGGATAGATTGAATAGGTTTGCAGCC AACTTAAAGCAAGCCACAGATAGCGATGCCAGAATTGAGCACGCAGTGAGGGATCATTCTGCACTCATGTCAATTCTTGATTGCCAACCGATAGAATCTG CACTTCCAAGTTTAGCTAGGCCAATAATGTCTTTGGATGCTAATGAAGATGCTATAGTAGGGGCCTTGAAGCAGAGCTTGAGGCAATTGGAGACTCTTGG TGCTCAGCGAGCTGGTCTCGAGGACATGCTCAAAGAGATGAAATGGAAGGATGATGTACTACCAAAGTTGATGACATCTGCTGGGTCCTACGAAGATCTT TTCAGGAAAGAGATAGCAAAATATGATCCCATCTGTGAAGACATTGCACAAAATATTGAGGGACAAGAACAGTTGCTGCTGCAAATTCAGGCTCGGAATG AAGAGTTTTCTGCTGTCTTTAACCTTCAAGATTACAAAGCATCTCGTGAGAAGTGTTATAAGCAAATACAGGCTGCCATAGCCAAGTATCGAGAAATAAA GGAGAACATCAACGAGGGATTGAAGTTTTATGTTAGTCTTCAGGATGCCATCACCAATATCAAACAGCAGTGCAGTGATTTTGTGATGACCAGAAATATC CAGTGTCAAGAAATGATTGAAGATGTACAAAGACAAATGGCTGGACTAAGTTTTCAAGACCATAAGAATACAGGCTCATACAGCTATCCTGCAGCAAACC AGCCCCATCAAACTCAAAGATCCAGTTCGCATCCTCCATCAGATCCTCAAAATGTTCCGCATCCGCATCCGCATCCTCAGCCCCAGACACAGTACTTTCA GCCTCCTGGGCAGTCTACAATGCCTGGTTATGCTCACCCTCCCCCCCCTTATACAACACCACAGCAGCCACCTCCTTATCATATGCGCCCTGCTCCTGGT GCTCCTTACCCACCTCGACAGGTTCAGCAACCACCAACAAACCAGGAGTATGGTCAACCTGCCTATCCAGGGTGGCGGGGCCCATACTACAATGCCCATG GACAACAACCTGGATCTCTTGCTCGGCCTACTTACACTATTCCAGGTCCATACCCTCCTCCTCACCAAGGCTATTATGAACAATAG
AA sequence Show only first row Show all	>Potri.010G116400.1 pacid=42797884 polypeptide=Potri.010G116400.1.p locus=Potri.010G116400 ID=Potri.010G116400.1.v4.1 annot-version=v4.1 MLAIYEKKTTSLDLYRPLRNYIAMFYSEREAQNLEDDLQTVKQYRSDLERQPDPSPTSRRDLLQKYFKALCLIETRFPISPDNDHINSVTFVWYDAFKQK QKASQQNIHLEKAAALFNLGAVYSQIGLSFDRATVEGRRQTIHAFIAAAGAFAYLRDNAAAKASVGTSTTVDVSVECVGMLERLMLAQAQECVFENTISK GSTPGVCAKISRQVGLYYEEALAALNVAPLKDNFDKGWTAHVQLKAALFYAEACFWYSLELHEKEEIAEEIARLKSGASTLAEAKKSSKGAAVQLLDAIS KLEANINRNLDRAVKENDRVYLMRVPSPSFLPPLPAFSMVKTMPMNEVLDASKEKMFASLVPDSSAKALSRYTEMVDNIIRTQAEKLQQGSELTRVRLKE MDLPDSILSLEGNFSLPTDLKEDVEAVQISQGPAGLEAELQQLMDLRRVNQELLVQTEELLQKEATEDSQFRSQFGTQWTRPQSSTLTKNLQDRLNRFAA NLKQATDSDARIEHAVRDHSALMSILDCQPIESALPSLARPIMSLDANEDAIVGALKQSLRQLETLGAQRAGLEDMLKEMKWKDDVLPKLMTSAGSYEDL FRKEIAKYDPICEDIAQNIEGQEQLLLQIQARNEEFSAVFNLQDYKASREKCYKQIQAAIAKYREIKENINEGLKFYVSLQDAITNIKQQCSDFVMTRNI QCQEMIEDVQRQMAGLSFQDHKNTGSYSYPAANQPHQTQRSSSHPPSDPQNVPHPHPHPQPQTQYFQPPGQSTMPGYAHPPPPYTTPQQPPPYHMRPAPG APYPPRQVQQPPTNQEYGQPAYPGWRGPYYNAHGQQPGSLARPTYTIPGPYPPPHQGYYEQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15130			Endosomal targeting BRO1-like ...		Potri.010G116400 [exp]	0	1
AT5G56890			Protein kinase superfamily pro...		Potri.018G068100 [exp]	2.00	0.7928
AT5G64300		ATGCH, ATRIBA1,...	RED FLUORESCENT IN DARKNESS 1,...		Potri.005G071600 [exp]	8.94	0.7309
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Potri.019G021500 [exp]	9.05	0.7458
AT1G69220		SIK1	Protein kinase superfamily pro...		Potri.010G157400 [exp]	13.96	0.6865	SIK1.1
AT1G54490		ATXRN4, XRN4, E...	ETHYLENE INSENSITIVE 5, ACC IN...		Potri.013G035600 [exp]	15.32	0.7217	XRN4.2
AT5G11700			unknown protein		Potri.018G058300 [exp]	18.16	0.7125
AT1G08600		ATRX, CHR20	P-loop containing nucleoside t...		Potri.013G048500 [exp]	18.33	0.7081	CHR923
AT3G08670			unknown protein		Potri.006G110700 [exp]	18.65	0.6944
AT5G65180			ENTH/VHS family protein (.1.2)		Potri.005G080800 [exp]	23.32	0.6863
AT4G14720	ZIM	TIFY4B, PPD2	PEAPOD 2, TIFY domain/Divergen...		Potri.002G048500 [exp]	24.91	0.6706

Compare expression of checked genes

Potri.010G116400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.