Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15140 368 / 2e-128 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3) AT5G20080 43 / 0.0001 FAD/NAD(P)-binding oxidoreductase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G126700 [exp] 433 / 2e-154 AT1G15140 395 / 9e-140 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035265 [exp] 371 / 5e-122 AT1G15130 836 / 0.0 Endosomal targeting BRO1-like domain-containing protein (.1) Lus10034633 [exp] 333 / 9e-115 AT1G15140 316 / 3e-108 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3) Lus10013488 [exp] 217 / 3e-71 AT1G15140 244 / 1e-82 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3) Lus10007955 [exp] 212 / 3e-69 AT1G15140 236 / 2e-79 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3) Lus10007954 [exp] 145 / 9e-43 AT1G15140 138 / 6e-41 FAD/NAD(P)-binding oxidoreductase (.1), FAD/NAD(P)-binding oxidoreductase (.2), FAD/NAD(P)-binding oxidoreductase (.3) Lus10014491 [exp] 46 / 2e-05 AT5G20080 475 / 1e-170 FAD/NAD(P)-binding oxidoreductase (.1) Lus10030059 [exp] 45 / 4e-05 AT5G20080 516 / 0.0 FAD/NAD(P)-binding oxidoreductase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0091 [poplar] [flax] NAD_Ferredoxin PF00175 [poplar] [flax] NAD_binding_1 Oxidoreductase NAD-binding domain
Representative CDS sequence Show only first row Show all	>Potri.010G116500.5 pacid=42798127 polypeptide=Potri.010G116500.5.p locus=Potri.010G116500 ID=Potri.010G116500.5.v4.1 annot-version=v4.1 ATGTCAGTTAAACTCTCTCCCTCTACTCTTCTCTCTTTATCACCGCCTCTCCTCCATGCGCACCATAGTCCTTCCCTCATTTCCATGTCTATCCTACGCC GCCTAGCTCCAAACCACCTAACCACACACCTCAGGCACCACCACAGGCGGCGTCTAGCCACGGTTGCCGCTGCAGTACGGCAAGACACAACGATCTGGAC ACAAGCGCCTCTGTCCGAGATCGAACCAGCGGCCGAGTCACTCTTCCACGTGAGCATCGACGTCTCTGACTATCCGGACCTCGCAGCTTCTCACACACGT GCTGGGCAATACTTACAGCTGCGCGTCCCCGACGTGGAGAAACCTTCGTTCCTGGCCATCGCCTCGCCGCCGTCTTACGCAGCGGAAAAAGGTGCGTTTG AATTTCTGGTGAAGAGCGTAGCGGGATCGACGGCAGAGCTGTTGTGCGGACTTAAAAAAGGGGACGTGGTGGAATTGAGCCAAGCTACGGGGAGAGGTTT CGAGATTGATCAAATTGAGCCCGCAGAGAAGTATCCTACGGTTCTGATTTTCGCCACTGGATCTGGCATCAGTCCAATTCGATCTCTTATAGAGTCTGGG TTTAGTGCCGATAAAAGATCTGATGTGAGGCTGTATTATGGAGCTAGAAACATTAAGAGAATGGCTTACCAGGATAGGTTTAAAGATTGGGAATCTTCTG GTGTTAAAATTGTGCCAGTGCTATCACAACCAGATGGCAGGTGGACTGGTGAAACTGGCTATGTACAGGCTGCTTTTGCCATGGCCAAGCAAATTTATAG CCCTACAGGCACTGGTGCTGTTCTCTGTGGGCAGAAACAGATGACTGAGGTTTGTTACTTCATTTATTTGTCAACGGTCATGTTTTCACATAATCTTTCT GAGCACATATTCTTCCTGCAGTTGTAA
AA sequence Show only first row Show all	>Potri.010G116500.5 pacid=42798127 polypeptide=Potri.010G116500.5.p locus=Potri.010G116500 ID=Potri.010G116500.5.v4.1 annot-version=v4.1 MSVKLSPSTLLSLSPPLLHAHHSPSLISMSILRRLAPNHLTTHLRHHHRRRLATVAAAVRQDTTIWTQAPLSEIEPAAESLFHVSIDVSDYPDLAASHTR AGQYLQLRVPDVEKPSFLAIASPPSYAAEKGAFEFLVKSVAGSTAELLCGLKKGDVVELSQATGRGFEIDQIEPAEKYPTVLIFATGSGISPIRSLIESG FSADKRSDVRLYYGARNIKRMAYQDRFKDWESSGVKIVPVLSQPDGRWTGETGYVQAAFAMAKQIYSPTGTGAVLCGQKQMTEVCYFIYLSTVMFSHNLS EHIFFLQL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Potri.010G116500 [exp]	0	1
AT1G28140			unknown protein		Potri.001G100300 [exp]	4.00	0.9767
AT5G36120		atylmg3, CCB3	"cofactor assembly, complex C ...		Potri.005G199000 [exp]	8.06	0.9674
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Potri.006G123600 [exp]	8.60	0.9701
AT5G16650			Chaperone DnaJ-domain superfam...		Potri.019G041400 [exp]	10.09	0.9474
AT5G13510		EMB3136	EMBRYO DEFECTIVE 3136, Ribosom...		Potri.010G215900 [exp]	11.74	0.9693
AT3G27750		EMB3123	EMBRYO DEFECTIVE 3123, unknown...		Potri.003G051400 [exp]	12.32	0.9664
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Potri.011G051400 [exp]	16.18	0.9364
AT1G32060		PRK	phosphoribulokinase (.1)		Potri.003G099400 [exp]	16.85	0.9675
AT4G11570			Haloacid dehalogenase-like hyd...		Potri.003G127100 [exp]	18.33	0.9487
AT4G20360		AtRab8D, AtRABE...	RAB GTPase homolog E1B (.1)		Potri.001G110200 [exp]	18.49	0.9658

Compare expression of checked genes

Potri.010G116500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.