Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	PtrAtpB_1,ATP.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08690 870 / 0 ATP synthase alpha/beta family protein (.1) AT5G08670 869 / 0 ATP synthase alpha/beta family protein (.1) AT5G08680 865 / 0 ATP synthase alpha/beta family protein (.1) ATCG00480 624 / 0 ATCG00480.1, ATPB ATP synthase subunit beta (.1) AT1G20260 116 / 1e-27 ATPase, V1 complex, subunit B protein (.1) AT1G76030 115 / 3e-27 ATPase, V1 complex, subunit B protein (.1) AT4G38510 115 / 4e-27 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) AT1G78900 114 / 1e-26 VHA-A vacuolar ATP synthase subunit A (.1.2) ATMG01190 98 / 2e-21 ATMG01190.1, ATP1 ATP synthase subunit 1 (.1) AT2G07698 95 / 3e-20 ATPase, F1 complex, alpha subunit protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G126600 [exp] 984 / 0 AT5G08690 892 / 0.0 ATP synthase alpha/beta family protein (.1) Potri.013G162800 [exp] 626 / 0 ATCG00480 927 / 0.0 ATP synthase subunit beta (.1) Potri.007G062122 [exp] 158 / 3e-46 ATCG00480 193 / 9e-61 ATP synthase subunit beta (.1) Potri.009G137800 [exp] 112 / 2e-26 AT4G38510 966 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) Potri.010G253500 [exp] 113 / 3e-26 AT1G78900 1184 / 0.0 vacuolar ATP synthase subunit A (.1.2) Potri.004G177500 [exp] 112 / 3e-26 AT4G38510 962 / 0.0 ATPase, V1 complex, subunit B protein (.1.2.3.4.5) Potri.008G005000 [exp] 113 / 4e-26 AT1G78900 1184 / 0.0 vacuolar ATP synthase subunit A (.1.2) Potri.007G062242 [exp] 95 / 2e-20 ATMG01190 924 / 0.0 ATP synthase subunit 1 (.1) Potri.013G138000 [exp] 84 / 9e-17 ATCG00120 933 / 0.0 ATP synthase subunit alpha (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034631 [exp] 927 / 0 AT5G08680 928 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10035264 [exp] 925 / 0 AT5G08680 925 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10034632 [exp] 876 / 0 AT5G08680 875 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10035263 [exp] 789 / 0 AT5G08680 782 / 0.0 ATP synthase alpha/beta family protein (.1) Lus10009173 [exp] 620 / 0 ATCG00480 890 / 0.0 ATP synthase subunit beta (.1) Lus10032827 [exp] 432 / 2e-149 ATCG00480 557 / 0.0 ATP synthase subunit beta (.1) Lus10024114 [exp] 132 / 2e-36 AT5G08680 120 / 8e-33 ATP synthase alpha/beta family protein (.1) Lus10032826 [exp] 108 / 1e-27 ATCG00480 219 / 2e-70 ATP synthase subunit beta (.1) Lus10035737 [exp] 116 / 3e-27 AT1G78900 1214 / 0.0 vacuolar ATP synthase subunit A (.1.2) Lus10037321 [exp] 116 / 3e-27 AT1G78900 1214 / 0.0 vacuolar ATP synthase subunit A (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00006 [poplar] [flax] ATP-synt_ab ATP synthase alpha/beta family, nucleotide-binding domain CL0023 [poplar] [flax] PF00306 [poplar] [flax] ATP-synt_ab_C ATP synthase alpha/beta chain, C terminal domain CL0275 [poplar] [flax] HAS-barrel PF02874 [poplar] [flax] ATP-synt_ab_N ATP synthase alpha/beta family, beta-barrel domain CL0275 [poplar] [flax] PF11421 [poplar] [flax] Synthase_beta ATP synthase F1 beta subunit
Representative CDS sequence Show only first row Show all	>Potri.010G116600.1 pacid=42798999 polypeptide=Potri.010G116600.1.p locus=Potri.010G116600 ID=Potri.010G116600.1.v4.1 annot-version=v4.1 ATGGCTTCACGCAGACTTTTATCATCTCTTCTCCGATCGTCTTCTCGCCGATCTATCTCCAAATCTACTTTATCAAGTTCCAATCCTAAGGTCTCTGCAT CTTCCACGCGCCGCGCGTCTCCTTACGGTTACCTCCTAAACCGCGCGGCTGAGTACGCGACCTCTGCAGCCGCCGCATCGCCTCCATCACAACCGCCTCC TGTCCAATCGGAGGGTAAGAAGGGGAAGGTCATCGACGAGTTTACCGGGAAGGGTTCGATCGGGCATGTGTGTCAGGTTATTGGAGCCGTCGTGGATGTG AAATTTGATGAGGGTTTGCCTCCGATTTTGACCGCTTTGGAGGTTCAGGGTCACTCAATCCGGTTGGTTCTTGAAGTGGCCCAGCATTTGGGAGAGAGTG TTGTTAGGACTATTGCTATGGATGGTACTGAAGGTTTGGTCAGAGGCCAGCCTGTTCTTAACACTGGATCTCCAATTACTGTGCCTGTGGGCAGGGCCAC TCTTGGTCGCATAATCAATGTCATTGGAGAAGCCATTGATGAGAAGGGAGACCTCAAGACGGAGCACTACTTGCCTATTCATAGGGAGGCTCCATCTTTT GTTGAGCAAGCAACTGAGCAACAGGTCCTTGTAACTGGTATCAAGGTTGTTGATCTCCTTGCACCATACCAAAGAGGAGGGAAGATTGGACTGTTTGGCG GTGCTGGCGTGGGAAAAACTGTGCTTATTATGGAACTTATCAACAATGTTGCAAAAGCTCATGGTGGTTTCTCTGTCTTTGCTGGTGTTGGTGAACGTAC CCGTGAGGGAAATGACTTGTACAGAGAAATGATTGAAAGTGGTGTCATTAAGCTAGGAGATCAGCAGGCTGAGAGCAAATGTGCTCTTGTGTATGGTCAA ATGAATGAGCCTCCTGGTGCTCGTGCCCGTGTTGGTCTCACTGGACTTACTGTGGCTGAGCACTTCCGTGATGCTGAAGGGCAAGATGTGCTTCTATTCA TTGACAACATTTTCCGCTTTACCCAGGCTAACTCAGAGGTGTCTGCCTTGCTTGGACGTATCCCATCTGCTGTTGGTTATCAGCCAACCTTGGCTACAGA TCTTGGAGGTCTTCAAGAACGAATTACAACAACCAAGAAAGGTTCCATTACTTCTGTTCAAGCTATTTATGTGCCTGCTGATGATTTGACGGATCCTGCT CCTGCCACAACTTTTGCTCACTTGGATGCCACAACTGTGCTGTCAAGACAGATTTCTGAGCTTGGTATCTATCCTGCTGTGGATCCCCTTGATTCTACAT CTCGTATGCTCTCACCTCATATTTTGGGTGAGGAACACTACAACACTGCTCGTGGTGTGCAGAAGGTTCTTCAAAACTATAAGAATTTGCAAGATATCAT TGCCATTTTGGGAATGGATGAGCTCAGTGAAGACGACAAGCTGACGGTTGCCCGTGCTCGTAAAATTCAGAGGTTCTTGAGCCAGCCCTTCCATGTTGCA GAAGTTTTCACTGGTGCTCCTGGAAAGTATGTCGAGTTGAAGGAGGGTGTACAAAGCTTCCAGGGAGTGTTGGATGGGAAATACGATGACCTTCCAGAGC AGTCATTTTACATGGTTGGTGGTATCGAGGAGGTTATTGCCAAGGCTGAGAAGATTTCCAAGGAATCTGCTGCTTAA
AA sequence Show only first row Show all	>Potri.010G116600.1 pacid=42798999 polypeptide=Potri.010G116600.1.p locus=Potri.010G116600 ID=Potri.010G116600.1.v4.1 annot-version=v4.1 MASRRLLSSLLRSSSRRSISKSTLSSSNPKVSASSTRRASPYGYLLNRAAEYATSAAAASPPSQPPPVQSEGKKGKVIDEFTGKGSIGHVCQVIGAVVDV KFDEGLPPILTALEVQGHSIRLVLEVAQHLGESVVRTIAMDGTEGLVRGQPVLNTGSPITVPVGRATLGRIINVIGEAIDEKGDLKTEHYLPIHREAPSF VEQATEQQVLVTGIKVVDLLAPYQRGGKIGLFGGAGVGKTVLIMELINNVAKAHGGFSVFAGVGERTREGNDLYREMIESGVIKLGDQQAESKCALVYGQ MNEPPGARARVGLTGLTVAEHFRDAEGQDVLLFIDNIFRFTQANSEVSALLGRIPSAVGYQPTLATDLGGLQERITTTKKGSITSVQAIYVPADDLTDPA PATTFAHLDATTVLSRQISELGIYPAVDPLDSTSRMLSPHILGEEHYNTARGVQKVLQNYKNLQDIIAILGMDELSEDDKLTVARARKIQRFLSQPFHVA EVFTGAPGKYVELKEGVQSFQGVLDGKYDDLPEQSFYMVGGIEEVIAKAEKISKESAA

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08690			ATP synthase alpha/beta family...		Potri.010G116600 [exp]	0	1	PtrAtpB_1,ATP.1
AT3G15020		mMDH2	mitochondrial malate dehydroge...		Potri.001G376500 [exp]	1.73	0.9560
AT5G13450		ATP5	delta subunit of Mt ATP syntha...		Potri.009G061600 [exp]	2.44	0.9436
AT5G14040		PHT3;1	phosphate transporter 3;1 (.1)		Potri.001G322300 [exp]	2.44	0.9395	PtrPht3-2
AT2G20420			ATP citrate lyase (ACL) family...		Potri.014G195700 [exp]	2.64	0.9109
AT2G20360			NAD(P)-binding Rossmann-fold s...		Potri.002G255900 [exp]	3.46	0.9285
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Potri.017G092400 [exp]	4.47	0.9257
AT5G13490		AAC2	ADP/ATP carrier 2 (.1.2)		Potri.009G062200 [exp]	4.89	0.8972	Pt-ANT2.1
AT3G13920		RH4, TIF4A1, EI...	eukaryotic translation initiat...		Potri.006G225700 [exp]	7.07	0.9033	TIF4.1
AT3G15020		mMDH2	mitochondrial malate dehydroge...		Potri.011G096300 [exp]	7.34	0.8884
AT5G08690			ATP synthase alpha/beta family...		Potri.008G126600 [exp]	7.74	0.8824	ATP.2

Compare expression of checked genes

Potri.010G116600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.