Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52450 558 / 0 MATE efflux family protein (.1) AT1G73700 527 / 0 MATE efflux family protein (.1) AT2G34360 522 / 0 MATE efflux family protein (.1) AT1G71140 438 / 2e-150 MATE efflux family protein (.1) AT1G15170 395 / 9e-134 MATE efflux family protein (.1) AT1G66760 394 / 6e-133 MATE efflux family protein (.1.2) AT1G15150 393 / 2e-132 MATE efflux family protein (.1) AT1G15160 389 / 3e-131 MATE efflux family protein (.1) AT2G04050 378 / 7e-127 MATE efflux family protein (.1) AT1G15180 378 / 9e-127 MATE efflux family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G051900 [exp] 612 / 0 AT5G52450 644 / 0.0 MATE efflux family protein (.1) Potri.006G170900 [exp] 554 / 0 AT5G52450 486 / 2e-169 MATE efflux family protein (.1) Potri.006G171240 [exp] 553 / 0 AT5G52450 486 / 3e-169 MATE efflux family protein (.1) Potri.010G116900 [exp] 475 / 5e-165 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.010G117000 [exp] 446 / 2e-153 AT1G15170 545 / 0.0 MATE efflux family protein (.1) Potri.008G126500 [exp] 440 / 4e-151 AT1G15170 546 / 0.0 MATE efflux family protein (.1) Potri.004G093400 [exp] 431 / 1e-147 AT1G71140 482 / 8e-168 MATE efflux family protein (.1) Potri.017G120500 [exp] 414 / 8e-141 AT2G04100 468 / 3e-162 MATE efflux family protein (.1) Potri.004G094700 [exp] 404 / 8e-137 AT2G04100 425 / 3e-145 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041994 [exp] 551 / 0 AT5G52450 608 / 0.0 MATE efflux family protein (.1) Lus10017998 [exp] 513 / 5e-179 AT5G52450 556 / 0.0 MATE efflux family protein (.1) Lus10001318 [exp] 503 / 7e-176 AT5G52450 507 / 1e-177 MATE efflux family protein (.1) Lus10019492 [exp] 475 / 1e-164 AT5G52450 485 / 6e-169 MATE efflux family protein (.1) Lus10029668 [exp] 465 / 1e-161 AT5G52450 490 / 6e-172 MATE efflux family protein (.1) Lus10042732 [exp] 437 / 4e-150 AT1G15170 562 / 0.0 MATE efflux family protein (.1) Lus10029694 [exp] 436 / 2e-149 AT1G15170 563 / 0.0 MATE efflux family protein (.1) Lus10018136 [exp] 431 / 4e-147 AT1G71140 571 / 0.0 MATE efflux family protein (.1) Lus10009132 [exp] 423 / 2e-144 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1) Lus10028540 [exp] 431 / 1e-141 AT1G15170 537 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.010G116700.1 pacid=42799482 polypeptide=Potri.010G116700.1.p locus=Potri.010G116700 ID=Potri.010G116700.1.v4.1 annot-version=v4.1 ATGCCAAGGAAGATGGAAACTGGAGCGGAAAAATCAAGTCTTGAATCACTTCTGATACGGAACCAAGAAAGAAGCCATGGAGTTGATGGGGAGGTATCTC AACAAGGTTGTTTTTGCAGAGAGGATTTTATTGGCGAAGCGAAGAAGCAACTATGGCTTGCAGGGCCTCTTATAGCAGTGAGTTTGCTGCAGTATTGCTT ACAAGTAATATCGATTATGTTTGTTGGTCATCTTGGCGAGCTTGCTCTTTCTAGTGCTTCCATGGCATGTTCCTTCGCTTCAGTTACTGGTTTCAGTGTA TTGCTAGGAATGGGAAGTGCATTGGAGACGCTGTGCGGGCAAGCCTATGGTGCCAAACAATACCACATGCTTGGTATTCACACACAGAGAGCAATGCTAA CACTCCTAATAGTAAGCATCCCTCTAGCAATCATTTGGTTTTACACTGGCACCCTTCTCTTATCTTTAGGCCAAGACGCTGAGATTTCAGCAGGAGCAGG GACATTTAACCGCTGGTTGATTCCAAGCCTATTCGCTTACGGCCTGCTTCAATGCCTTAACAGATTGTTACAAACCCAAAATAATGTTTTCCCTATGATG CTAAGCTCCGGGGCCACATCTTTGCTGCACATTATTGTGTGTTGGGGTCTTGTTTTTAAATCTGGACTTGGAAGTAAAGGTGCTGCCTTGGCGATTACTA TTTCGAATTGGATTAATGTATTTATGCTAGCAATATATGTAAAGTACTCGCCTACTTGCGCGAAAACTTGGACCGGCTTTTCAAAAGAAGCTTTGCATGA TATTTTCAGCTTTGTAAAGCTTGCAGTTCCTTCAGCAATCATGATATGCTTGGAGTATTGGTCATTTGAGATGGTGGTTCTGCTATCCGGTCTTCTCCCA AATCCCAAACTAGAGGCATCTGTGCTATCAATAAGCCTTAACACATGTTGGATGGTCTATATGATCTCTGTTGGCCTTGGTGGAACCATAAGTACAAGAG TATCAAATGAACTGGGGGCTGGGCGCCCACAAGGTGCACGTTTGGCTATCTGTGTTATGATCATCATCGCCCTGTCAGAGGGTGCAGCGGTTGGAATTAC TACAATTTTGGTACGCCAAGTATGGGGAAATCTCTACAGCAATGAAGAAGAAGTGATAACATATGTTGCTAATATGATGCCACTGCTAGCACTATCTGAC TTCTTGGATGGATTCCAATGCGTGCTTTCAGGAGCCGCAAGAGGATGTGGGTGGCAAAATCTGTGTGCATTTATCAACCTTGGAGCTTACTATGTTGTGG CAATTCCTTCAGCTGTTCTCCTTGCTTTCATCTTCCATATTGGAGGCATGGGGCTTTGGATGGGGATCATATGTGGCCTCGTTGTGCAAGTTGTGGCGCT TGTTTCTGTAAATGCATGTACAGATTGGGATCGAGAGGCAGCTAAAGCCATCACTCGAGTCGAAGAAACTGGCATTGACTCGCATGGAACATAG
AA sequence Show only first row Show all	>Potri.010G116700.1 pacid=42799482 polypeptide=Potri.010G116700.1.p locus=Potri.010G116700 ID=Potri.010G116700.1.v4.1 annot-version=v4.1 MPRKMETGAEKSSLESLLIRNQERSHGVDGEVSQQGCFCREDFIGEAKKQLWLAGPLIAVSLLQYCLQVISIMFVGHLGELALSSASMACSFASVTGFSV LLGMGSALETLCGQAYGAKQYHMLGIHTQRAMLTLLIVSIPLAIIWFYTGTLLLSLGQDAEISAGAGTFNRWLIPSLFAYGLLQCLNRLLQTQNNVFPMM LSSGATSLLHIIVCWGLVFKSGLGSKGAALAITISNWINVFMLAIYVKYSPTCAKTWTGFSKEALHDIFSFVKLAVPSAIMICLEYWSFEMVVLLSGLLP NPKLEASVLSISLNTCWMVYMISVGLGGTISTRVSNELGAGRPQGARLAICVMIIIALSEGAAVGITTILVRQVWGNLYSNEEEVITYVANMMPLLALSD FLDGFQCVLSGAARGCGWQNLCAFINLGAYYVVAIPSAVLLAFIFHIGGMGLWMGIICGLVVQVVALVSVNACTDWDREAAKAITRVEETGIDSHGT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G52450			MATE efflux family protein (.1...		Potri.010G116700 [exp]	0	1
AT1G29750		RKF1	receptor-like kinase in flower...		Potri.011G072300 [exp]	1.41	0.9245
AT3G14470			NB-ARC domain-containing disea...		Potri.006G271800 [exp]	1.41	0.9328
AT4G02860			Phenazine biosynthesis PhzC/Ph...		Potri.010G175701 [exp]	4.89	0.9012
					Potri.017G046750 [exp]	6.24	0.9234
AT4G02860			Phenazine biosynthesis PhzC/Ph...		Potri.010G175700 [exp]	10.90	0.9005
AT3G61220		SDR1	short-chain dehydrogenase/redu...		Potri.002G156800 [exp]	12.48	0.8916
AT2G30230			unknown protein		Potri.006G076500 [exp]	12.96	0.8945
AT5G63020			Disease resistance protein (CC...		Potri.001G313300 [exp]	13.41	0.8621	RGA3.1
AT1G29000			Heavy metal transport/detoxifi...		Potri.014G178800 [exp]	13.71	0.9156
AT1G68850			Peroxidase superfamily protein...		Potri.010G134500 [exp]	14.49	0.9106

Compare expression of checked genes

Potri.010G116700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.