Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15170 545 / 0 MATE efflux family protein (.1) AT1G15180 511 / 1e-178 MATE efflux family protein (.1.2) AT1G71140 507 / 2e-177 MATE efflux family protein (.1) AT1G15150 504 / 3e-176 MATE efflux family protein (.1) AT1G15160 504 / 6e-176 MATE efflux family protein (.1) AT2G04080 435 / 4e-149 MATE efflux family protein (.1) AT2G04050 432 / 7e-148 MATE efflux family protein (.1) AT2G04100 427 / 4e-146 MATE efflux family protein (.1) AT2G04040 426 / 2e-145 ATDTX1 detoxification 1, MATE efflux family protein (.1) AT2G04090 421 / 1e-143 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G126500 [exp] 755 / 0 AT1G15170 546 / 0.0 MATE efflux family protein (.1) Potri.010G116900 [exp] 601 / 0 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.004G093400 [exp] 488 / 5e-170 AT1G71140 482 / 8e-168 MATE efflux family protein (.1) Potri.017G120500 [exp] 474 / 3e-164 AT2G04100 468 / 3e-162 MATE efflux family protein (.1) Potri.004G094900 [exp] 458 / 4e-158 AT1G71140 503 / 3e-176 MATE efflux family protein (.1) Potri.017G120600 [exp] 456 / 2e-157 AT1G66760 468 / 2e-162 MATE efflux family protein (.1.2) Potri.004G094700 [exp] 453 / 6e-156 AT2G04100 425 / 3e-145 MATE efflux family protein (.1) Potri.004G094800 [exp] 438 / 9e-151 AT2G04100 479 / 2e-167 MATE efflux family protein (.1) Potri.017G120400 [exp] 436 / 2e-149 AT2G04100 508 / 3e-178 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10018134 [exp] 586 / 0 AT1G15170 542 / 0.0 MATE efflux family protein (.1) Lus10042732 [exp] 560 / 0 AT1G15170 562 / 0.0 MATE efflux family protein (.1) Lus10028540 [exp] 558 / 0 AT1G15170 537 / 0.0 MATE efflux family protein (.1) Lus10029694 [exp] 557 / 0 AT1G15170 563 / 0.0 MATE efflux family protein (.1) Lus10018136 [exp] 549 / 0 AT1G71140 571 / 0.0 MATE efflux family protein (.1) Lus10018135 [exp] 525 / 0 AT1G15170 524 / 0.0 MATE efflux family protein (.1) Lus10000619 [exp] 494 / 2e-171 AT1G71140 528 / 0.0 MATE efflux family protein (.1) Lus10004899 [exp] 465 / 4e-162 AT1G15170 474 / 2e-166 MATE efflux family protein (.1) Lus10009132 [exp] 446 / 6e-153 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1) Lus10009140 [exp] 444 / 2e-152 AT1G64820 560 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.010G117000.2 pacid=42798195 polypeptide=Potri.010G117000.2.p locus=Potri.010G117000 ID=Potri.010G117000.2.v4.1 annot-version=v4.1 ATGGATGGGAGAGACAGGGGAGATCCAGAAACAGTGGAGATCGAGGAGCCCACGAAAGACACAGCGATGAGCATGGAAGAGAGTTTACTGCTACCGAAAA AGAGATCAGAATTAGAAGGAAGGGAAAGATTAGTCCTAACACGGGATGTGTTCACTCAAGAAGCGAAAAAGCTTGCTTATATAGCAGGACCCATGGTGGT TACCATTACTTCCCTCTACTTGTTACTGGTTATATCAAATATGATGGTGGGTCATTTGGGAGAGCTAGCTCTTTCAAGCGCTGCAATATCCATCTCCTTC TGTAATGTAACCGGCATGAGTCTTCTTAACGGATTGGCAAGTGCACTGGAAACTTTATGTGGGCAAGCTTATGGAGCTCAACAATATCAAAAAGTGGGAC ATCAAACTTATGGTGCTATGTTCTCCCTAGTTTTAGTTGCTTCCCTTGTGTCTCTTGTTTGGATCAACGTGGAAAAGGTGCTCATATTAATTGGCCAAGA TCCCATAATTGCACATGAAGCTGGAAGATTTACATTATGGACTGTTCCTACCCTTTTTGCTTATGCAATATTTCAGCCACTTTCTCGATACCTTCAAATT CAAAGTTTAACCATTCCAATGCTTGCGAGCTCTGTTGTCACTCTTCTTTTACATATACCCCTATGCTGGTTCTTAGTATTCAAGTCTGGACTAGAAAATG TTGGAGGAGCATTAGCTATCAGCATTTCAAATTGGTTAAATGTTATTTTTCTTTTATTGTACATGAAATATTCTTCTGCCTGTGCAAAAACCCGTGTCCC AGTTTCTATGGAGATGTTCCATGGAATTGGAGAATTCTTCCGTTTTGCTATCCCATCTGCCGTAATGATTTGCCTGCAATGGTGGGCATATGAGATTGTA GTCTTGCTATCAGGGCTCTTATCAAATCCACAACTCGAGACTTCAGTCCTATCTGTGTGTCTCACTACAACCTCAACACTCTACTCAATACCGTATGGAA TAGGTGCTGCAGTAAGCACTAGAGTCTCAAATGAATTAGGAGCTGGGCGCCCACAAGCTGCTCGCATAGCCGTCTACACTGTTATGATTCTAGCAATCAT TGAAGTAATTATAGTAAGCGGAACCCTCTTCGGCACCCGAGACATTTTTGGTTACAGTTTTAGCAACGAGAAGGAAGTTGTGGACTATGTTTCCAACATG ACCCCTCTGGTCTGTTTGTCTGTTATATTAGATGGCTTACAAGTGGTTCTTTCAGGTGTTGCAAGGGGATGTGGGTGGCAGCATATAGGGGCTTATGTCA ATCTTGCTGCATTTTATCTTTGTGGGGTTCCAGTGGCTGCCATACTGGGCCTTTGGTTGCAGTTGAAAGCAAGGGGCCTTTGGATAGGCATACAAGTTGG TGCCATTTTGCAAACAGTTCTTCTCTCCCTCATAACAAGCTGTACGAATTGGGAAAAACAGGCAAGTGACGCAAGGGAAAGAATATTTGAGGAAAGATAT TCAGTAGAAAGCGTATTAGAGCACTGA
AA sequence Show only first row Show all	>Potri.010G117000.2 pacid=42798195 polypeptide=Potri.010G117000.2.p locus=Potri.010G117000 ID=Potri.010G117000.2.v4.1 annot-version=v4.1 MDGRDRGDPETVEIEEPTKDTAMSMEESLLLPKKRSELEGRERLVLTRDVFTQEAKKLAYIAGPMVVTITSLYLLLVISNMMVGHLGELALSSAAISISF CNVTGMSLLNGLASALETLCGQAYGAQQYQKVGHQTYGAMFSLVLVASLVSLVWINVEKVLILIGQDPIIAHEAGRFTLWTVPTLFAYAIFQPLSRYLQI QSLTIPMLASSVVTLLLHIPLCWFLVFKSGLENVGGALAISISNWLNVIFLLLYMKYSSACAKTRVPVSMEMFHGIGEFFRFAIPSAVMICLQWWAYEIV VLLSGLLSNPQLETSVLSVCLTTTSTLYSIPYGIGAAVSTRVSNELGAGRPQAARIAVYTVMILAIIEVIIVSGTLFGTRDIFGYSFSNEKEVVDYVSNM TPLVCLSVILDGLQVVLSGVARGCGWQHIGAYVNLAAFYLCGVPVAAILGLWLQLKARGLWIGIQVGAILQTVLLSLITSCTNWEKQASDARERIFEERY SVESVLEH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G15170			MATE efflux family protein (.1...		Potri.010G117000 [exp]	0	1
					Potri.006G211800 [exp]	2.23	0.8718
AT3G25860		PLE2, LTA2	PLASTID E2 SUBUNIT OF PYRUVATE...		Potri.008G119500 [exp]	6.48	0.8303
AT4G08850			Leucine-rich repeat receptor-l...		Potri.013G036600 [exp]	11.09	0.8514
AT5G41070		DRB5	dsRNA-binding protein 5 (.1)		Potri.013G032400 [exp]	14.14	0.8398
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Potri.010G096301 [exp]	23.21	0.7944
AT2G42120		POLD2	DNA polymerase delta small sub...		Potri.016G045800 [exp]	24.26	0.8140
AT1G06440			Ubiquitin carboxyl-terminal hy...		Potri.002G245100 [exp]	26.98	0.8506
AT2G45830		DTA2	downstream target of AGL15 2 (...		Potri.014G081600 [exp]	31.22	0.8311
AT1G55800			Domain of unknown function (DU...		Potri.016G003066 [exp]	32.12	0.7581
AT5G60870		RUG3	RCC1/UVR8/GEF-like 3, Regulato...		Potri.004G000600 [exp]	32.86	0.8397

Compare expression of checked genes

Potri.010G117000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.