Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G22970 282 / 4e-93 unknown protein AT1G71150 265 / 1e-86 unknown protein AT1G22980 195 / 3e-59 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G126400 [exp] 453 / 3e-160 AT1G22970 363 / 7e-125 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034613 [exp] 352 / 2e-120 AT1G71150 369 / 2e-127 unknown protein Lus10021799 [exp] 349 / 3e-119 AT1G71150 363 / 5e-125 unknown protein Lus10007946 [exp] 140 / 3e-40 AT1G71150 144 / 4e-42 unknown protein Lus10007947 [exp] 61 / 2e-11 AT1G71150 102 / 3e-27 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF13324 [poplar] [flax] GCIP Grap2 and cyclin-D-interacting
Representative CDS sequence Show only first row Show all	>Potri.010G117100.3 pacid=42799633 polypeptide=Potri.010G117100.3.p locus=Potri.010G117100 ID=Potri.010G117100.3.v4.1 annot-version=v4.1 ATGGAACCCTCATTGATACACGGAGTTCCGCCCCCTGCTCATATTTGTGATTTGTCACCCGTCCCGTGTCTATTGAAAGGAGATTTTGGACCTGTTTCCC ACTTCGGGAGAGCTAGCTGTGGCTCTCTTTTTCATATGTGGCATTGTGGGTCAGATTTGGGTATGCAATGGTGTTTCTATTATGGTGCAGCTGGAATGCT CTGGACTGGGGAAACACCAGAAGCTAAAGCGGTTGAGGAAAACATGGCAACCTACTTCAATAAGCTCCAGGGTTTGCTTCTGCTTTCTCATGGAAGTATG GTAGGTGCAGGACCTACTCTTGCATCTGCTATCCATTCATCCATTAAGCAAGTTGTTGAATGCAGTTTTAAGTTGATGATGGAAACTGTCTCCTCATTTG GATCTCGAAATAAAGACCTCAAACCTTTAGTCCCACAATTAGTTGGTGCAGTATGGGAAGCATGCACTGCTCTTAAGAAGACTCCTGCTTCAAATATCAC AGCAATTGGGCGAGCAATGACACAGGTTGCAGTTTCAGTGAAGGATGATTGGGCGAGCAATGACACAGAAACTAGACTCGGTGACAATGATAGTCTGAGT GATGACCTAGGCAATGACCTGTCACCTGAAGAGATGAAAGTTGCTCAATCAGCAATTGGGGTTGTGTCTGAGACAGTTGTAGTCATAAAAGAACTTATCC GCACCATCACTGGTTTGCTTAAGCAAGAAAAGCCTGAAGACAGCGGCAATTTTGTGGACACTCTGGAGAAGTTATTGAAGCTGTGCCAAGAGATTGGAGT GCAGATTGATGAGCTTGGGGCCTGTCTTTATCCCCCGCAAGAATTTCCAGCTATGAAGGCAGCCTTCGAGAAAATTTCTAGTGCTATTGACAAAGTGCAG ACAGAGATAGAAAGTTTGACAAGCTCTTCAGAAGCTGTTTTCCAGGCATGCAATGATTTGAAAAGGTCATTGAAACAAATGGAAGCTACACTGGGTTGCT GTAGTACTAGTGATATAGAATTCATAATGCAGAATGTCGCTCTAAGCTGTCAAGAGGGATGGGGGAACTCGCTCAGAGTTTGTTTCTGA
AA sequence Show only first row Show all	>Potri.010G117100.3 pacid=42799633 polypeptide=Potri.010G117100.3.p locus=Potri.010G117100 ID=Potri.010G117100.3.v4.1 annot-version=v4.1 MEPSLIHGVPPPAHICDLSPVPCLLKGDFGPVSHFGRASCGSLFHMWHCGSDLGMQWCFYYGAAGMLWTGETPEAKAVEENMATYFNKLQGLLLLSHGSM VGAGPTLASAIHSSIKQVVECSFKLMMETVSSFGSRNKDLKPLVPQLVGAVWEACTALKKTPASNITAIGRAMTQVAVSVKDDWASNDTETRLGDNDSLS DDLGNDLSPEEMKVAQSAIGVVSETVVVIKELIRTITGLLKQEKPEDSGNFVDTLEKLLKLCQEIGVQIDELGACLYPPQEFPAMKAAFEKISSAIDKVQ TEIESLTSSSEAVFQACNDLKRSLKQMEATLGCCSTSDIEFIMQNVALSCQEGWGNSLRVCF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G22970			unknown protein		Potri.010G117100 [exp]	0	1
AT1G60460			unknown protein		Potri.010G041900 [exp]	3.46	0.9245
AT3G54230		SUA	suppressor of abi3-5 (.1.2)		Potri.017G138401 [exp]	3.87	0.9369
AT1G73360	HD	ATHDG11, HDG11,...	ENHANCED DROUGHT TOLERANCE 1, ...		Potri.004G074800 [exp]	5.74	0.9254
					Potri.004G093250 [exp]	6.70	0.9077
AT4G14370			Disease resistance protein (TI...		Potri.011G014501 [exp]	7.74	0.8823
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Potri.004G164500 [exp]	8.48	0.8943	GAS41.1
AT5G65960			GTP binding (.1)		Potri.002G177100 [exp]	9.48	0.9178
AT1G28510			Optic atrophy 3 protein (OPA3)...		Potri.013G123000 [exp]	10.95	0.9183
AT2G37030			SAUR-like auxin-responsive pro...		Potri.016G091500 [exp]	11.22	0.9199
					Potri.004G170442 [exp]	11.95	0.9090

Compare expression of checked genes

Potri.010G117100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.