Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	APG2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01110 389 / 3e-135 TATC, PGA2, APG2, UNE3 unfertilized embryo sac 3, TWIN-ARGININE TRANSLOCATION C, ALBINO AND PALE GREEN 2, Sec-independent periplasmic protein translocase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013482 [exp] 414 / 3e-143 AT2G01110 441 / 2e-154 unfertilized embryo sac 3, TWIN-ARGININE TRANSLOCATION C, ALBINO AND PALE GREEN 2, Sec-independent periplasmic protein translocase (.1) Lus10007945 [exp] 370 / 2e-129 AT2G01110 392 / 7e-139 unfertilized embryo sac 3, TWIN-ARGININE TRANSLOCATION C, ALBINO AND PALE GREEN 2, Sec-independent periplasmic protein translocase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00902 [poplar] [flax] TatC Sec-independent protein translocase protein (TatC)
Representative CDS sequence Show only first row Show all	>Potri.010G117200.1 pacid=42798672 polypeptide=Potri.010G117200.1.p locus=Potri.010G117200 ID=Potri.010G117200.1.v4.1 annot-version=v4.1 ATGGGGAGCGCGAGTCTCATCCCCCATCTGCAACTCCATGGTTGCTTCTACAAACGCTTGGACTCCGTCAGAAACGAACACCAACAATTTCCTTCACTAC AGCTCAACATTAATTCCAAGAGGAGAGGGAGATTGAGATTCGATGCCCCGCATACCAGGTCGACAAGTTTCAGAAGAGTCGTTTGTTTCGCTGCTGTTGA CGATGACGTCTCCGAGAAGCAGCAGCAGCAGCAGCAAGATTCAACCAGTACTAGCTCACTTCTCGAGGATAGGCCTGATACAGATGTGGTCGATAGTTTG CCACAAAACTTTGGGCAAGATAGTGAAGGAAGTCCGATTTACAATTTTCTTTATCCCCAAAAAGAGCTACTTCCCGATGATAAAGAAATGAGCTTATTTG ATCACCTTGAAGAGTTGCGAGAGAGAATATTTGTTTCAGTTTTCGCGGTTGGAGCTGCTATCGTGGGATGCTTTGCATTTTCAAAAGAACTCGTTATAGT TCTTGAAGCTCCTGTTAAATCGCAAGGTGTACGATTTCTGCAACTAGGTCCTGGTGAATTTTTCTTCACAACTTTAAAGGTTTCAGGATATTGTGGCCTT CTTTTGGGAAGCCCGATTATTCTCTATGAGATCATAGCCTTTGTTCTTCCAGGTTTAACAAAATCAGAGAGAAGGTTCCTGGGACCGATTGTTTTAGGCT CCTCGGTACTTTTCTATGCTGGAATTAGTTTCTCCTATTTGATTTTAACTCCAGCAGCTTTGAATTTCTTCGTTAGTTATGCTGAAGGGGCTGTGGAATC TTTGTGGTCCATTGATCAATACTTCGAGTTTGTGCTTGTGCTTATGTTCAGCACAGGCTTGTCATTCCAGGTTCCTGTGATACAAATTCTTCTTGGACAA GTTGGCCTAGTTTCAGGCGACCAAATGCTTTCGATTTGGAGATATGTTGTAGTTGGTGCAGTTGTTGCAGCAGCTGTACTTACACCATCAACAGATCCTC TTACTCAGTTGCTTCTAGCAGGACCGCTTCTAGGTCTTTACTTGGGTGGTGCATGGGTTGTCAAGCTTACAGGCCGATGA
AA sequence Show only first row Show all	>Potri.010G117200.1 pacid=42798672 polypeptide=Potri.010G117200.1.p locus=Potri.010G117200 ID=Potri.010G117200.1.v4.1 annot-version=v4.1 MGSASLIPHLQLHGCFYKRLDSVRNEHQQFPSLQLNINSKRRGRLRFDAPHTRSTSFRRVVCFAAVDDDVSEKQQQQQQDSTSTSSLLEDRPDTDVVDSL PQNFGQDSEGSPIYNFLYPQKELLPDDKEMSLFDHLEELRERIFVSVFAVGAAIVGCFAFSKELVIVLEAPVKSQGVRFLQLGPGEFFFTTLKVSGYCGL LLGSPIILYEIIAFVLPGLTKSERRFLGPIVLGSSVLFYAGISFSYLILTPAALNFFVSYAEGAVESLWSIDQYFEFVLVLMFSTGLSFQVPVIQILLGQ VGLVSGDQMLSIWRYVVVGAVVAAAVLTPSTDPLTQLLLAGPLLGLYLGGAWVVKLTGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01110		TATC, PGA2, APG...	unfertilized embryo sac 3, TWI...		Potri.010G117200 [exp]	0	1	APG2.1
AT2G20920			Protein of unknown function (D...		Potri.009G137600 [exp]	1.00	0.9893
AT5G45170			Haloacid dehalogenase-like hyd...		Potri.015G112500 [exp]	4.00	0.9754
AT3G26900		ATSKL1	Arabidopsis thaliana shikimate...		Potri.017G062800 [exp]	4.00	0.9804	SK1
AT5G66055		EMB16, EMB2036,...	EMBRYO DEFECTIVE 2036, EMBRYO ...		Potri.007G060400 [exp]	4.89	0.9764
AT1G27385			unknown protein		Potri.001G056500 [exp]	5.47	0.9737
AT5G09995			unknown protein		Potri.010G003700 [exp]	7.00	0.9733
AT3G58140			phenylalanyl-tRNA synthetase c...		Potri.013G105200 [exp]	8.00	0.9732
AT2G41120			unknown protein		Potri.006G025200 [exp]	8.36	0.9727
AT4G11175			Nucleic acid-binding, OB-fold-...		Potri.006G241100 [exp]	8.83	0.9734
AT5G08340			Nucleotidylyl transferase supe...		Potri.007G075500 [exp]	9.94	0.9496

Compare expression of checked genes

Potri.010G117200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.