Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08510 294 / 2e-96 FATB fatty acyl-ACP thioesterases B (.1) AT3G25110 250 / 6e-80 ATFATA fatA acyl-ACP thioesterase (.1) AT4G13050 246 / 3e-78 Acyl-ACP thioesterase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G126200 [exp] 627 / 0 AT1G08510 239 / 2e-75 fatty acyl-ACP thioesterases B (.1) Potri.012G051400 [exp] 484 / 1e-171 AT1G08510 297 / 1e-97 fatty acyl-ACP thioesterases B (.1) Potri.006G155800 [exp] 310 / 1e-102 AT1G08510 612 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.006G157200 [exp] 310 / 1e-102 AT1G08510 612 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.018G072700 [exp] 300 / 1e-98 AT1G08510 611 / 0.0 fatty acyl-ACP thioesterases B (.1) Potri.012G101500 [exp] 296 / 3e-97 AT1G08510 329 / 4e-110 fatty acyl-ACP thioesterases B (.1) Potri.015G099600 [exp] 284 / 1e-92 AT1G08510 330 / 2e-110 fatty acyl-ACP thioesterases B (.1) Potri.001G177600 [exp] 257 / 4e-82 AT1G08510 343 / 2e-115 fatty acyl-ACP thioesterases B (.1) Potri.001G177900 [exp] 251 / 1e-79 AT1G08510 339 / 5e-114 fatty acyl-ACP thioesterases B (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034617 [exp] 515 / 0 AT1G08510 275 / 6e-89 fatty acyl-ACP thioesterases B (.1) Lus10007942 [exp] 512 / 0 AT1G08510 288 / 6e-94 fatty acyl-ACP thioesterases B (.1) Lus10000365 [exp] 504 / 5e-179 AT1G08510 274 / 2e-88 fatty acyl-ACP thioesterases B (.1) Lus10013480 [exp] 500 / 4e-177 AT1G08510 287 / 2e-93 fatty acyl-ACP thioesterases B (.1) Lus10017751 [exp] 308 / 2e-101 AT1G08510 602 / 0.0 fatty acyl-ACP thioesterases B (.1) Lus10033072 [exp] 307 / 2e-101 AT1G08510 605 / 0.0 fatty acyl-ACP thioesterases B (.1) Lus10011839 [exp] 247 / 2e-78 AT3G25110 508 / 0.0 fatA acyl-ACP thioesterase (.1) Lus10025912 [exp] 239 / 1e-75 AT3G25110 503 / 1e-179 fatA acyl-ACP thioesterase (.1) Lus10038190 [exp] 235 / 7e-74 AT3G25110 493 / 1e-175 fatA acyl-ACP thioesterase (.1) Lus10022772 [exp] 234 / 1e-73 AT3G25110 493 / 8e-176 fatA acyl-ACP thioesterase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0050 [poplar] [flax] HotDog PF01643 [poplar] [flax] Acyl-ACP_TE Acyl-ACP thioesterase
Representative CDS sequence Show only first row Show all	>Potri.010G117400.1 pacid=42797081 polypeptide=Potri.010G117400.1.p locus=Potri.010G117400 ID=Potri.010G117400.1.v4.1 annot-version=v4.1 ATGGCTACATTCTCGTATACGATCCCCTTGCCCATCAGATGCTCTACCACCGGTAACAAACAAGATCCTAAAAAGCAAAACCTTAACAAAATCAAAATTA CTGGGACTCCTACCAGGTCCGTTAAGGTTGATACACTTAGCCAAACTGCCGGGGTGGCAAAAACCTCGGTTGCTTCAGTCGAAAATGGCCATATCTCCAA AGAGCAGATACGTCAAAACATACCAACAAAGAAGCAGTTTGTTGATTATCATCGCCAAGGCCTCATCGTCGAAGGTGGTGTTGGGTACAGACAGACTGTT GTTATTAGGTCCTATGAAGTTGGTGCTGATAAAACTGCTACGCTCGAGAGCATCCTTAATCTTCTTCAGGAAACAGCATTGAATCATGTATGGATGTCGG GACTTCTCAGCAATGGATTTGGTGCCACACATGGAATGATGAAGAACAATCTCATATGGGTTGTCTCAAGAATGCAAGTCCTGGTGGATCAATACCCAAT CTGGGGAGAGATAGTGGAAATCGACACATGGGTTGGAGCATCAGGGAAGAATGGAATGCGGCGAGACTGGCTCATACGAAGCCAAGCAACAGGCCATGTC TTTGCACGTGCAACAAGTACTTGGGTGATGATGAACGAAAAGACAAGGCGCCTCTCAAAGATGCCAGAGGAGGTCAGGACTGAAATTTCACCGTGGTTTA TAGAGAAACAAGCTATCCATGAAGATGTCCCGGAGAAAATCTCGAAGTTGGACAGCAACGCAAAATATGTGAACTCAAACTTGAAGCCCAAGAGGAGTGA TTTGGATATGAACCAACATGTCAACAATGTGAAGTACGTTAGATGGATGTTGGAGACTATTCCTGACCAGTTTTTGGAGTCTCATCAACTTTCCGGCATC ATCTTAGAGTACAGAAGGGAGTGTGGGAGTTCAAATATAGTTCAATCACTCTGCGAACCCGACGAGGATGGAATCCTTAATAGTGGTTTGAAACAAAACA ACGACATGAGCCCGCTCAATAGGTTTTCTTTGGCCTCAGAAATCATGGAAGGCAATGGACTCCTAGGATCCTTGGATAAGGTCCCTCTAAGATACACACA TCTCCTTCAAACCCAAGGCGATACTCAAAACGAAGAGATCGTAAGAGGAAAGACCACATGGAAGAAAAAGCAATCTAATATTGAGCTGTCTAATATGCCA TTTTCCATTTAA
AA sequence Show only first row Show all	>Potri.010G117400.1 pacid=42797081 polypeptide=Potri.010G117400.1.p locus=Potri.010G117400 ID=Potri.010G117400.1.v4.1 annot-version=v4.1 MATFSYTIPLPIRCSTTGNKQDPKKQNLNKIKITGTPTRSVKVDTLSQTAGVAKTSVASVENGHISKEQIRQNIPTKKQFVDYHRQGLIVEGGVGYRQTV VIRSYEVGADKTATLESILNLLQETALNHVWMSGLLSNGFGATHGMMKNNLIWVVSRMQVLVDQYPIWGEIVEIDTWVGASGKNGMRRDWLIRSQATGHV FARATSTWVMMNEKTRRLSKMPEEVRTEISPWFIEKQAIHEDVPEKISKLDSNAKYVNSNLKPKRSDLDMNQHVNNVKYVRWMLETIPDQFLESHQLSGI ILEYRRECGSSNIVQSLCEPDEDGILNSGLKQNNDMSPLNRFSLASEIMEGNGLLGSLDKVPLRYTHLLQTQGDTQNEEIVRGKTTWKKKQSNIELSNMP FSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G08510		FATB	fatty acyl-ACP thioesterases B...		Potri.010G117400 [exp]	0	1
					Potri.015G061500 [exp]	1.00	0.9403
AT5G52160			Bifunctional inhibitor/lipid-t...		Potri.015G139100 [exp]	2.82	0.9270
AT2G26530		AR781	Protein of unknown function (D...		Potri.009G068200 [exp]	5.65	0.8819
AT2G26560		PLP2, PLAIIA, P...	PATATIN-LIKE PROTEIN 2, phosph...		Potri.017G133800 [exp]	7.74	0.8596
					Potri.019G014366 [exp]	12.64	0.8141
AT1G61110	NAC	ANAC025	NAC domain containing protein ...		Potri.004G049500 [exp]	24.89	0.9200
AT1G03050			ENTH/ANTH/VHS superfamily prot...		Potri.010G103200 [exp]	30.00	0.8714
AT3G62230		DAF1	DUO1-activated F-box 1, F-box ...		Potri.001G420500 [exp]	42.42	0.7453
					Potri.004G111232 [exp]	42.74	0.8849
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Potri.005G188500 [exp]	45.43	0.8473

Compare expression of checked genes

Potri.010G117400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.